Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g24040.t1|RL28_MOUSE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 41 1 XP_065653550.1 (g27576.t1|HLYS_HYDVU) 4.29 9.7 97.5% feature · violin
Cluster 41 2 XP_065659606.1 (g8307.t1|NH2L1_XENTR) 2.86 9.6 100.0% feature · violin
Cluster 41 3 XP_065651609.1 (g18365.t1|PABP1_MOUSE) 1.85 9.2 100.0% feature · violin
Cluster 41 4 XP_065647909.1 (g17707.t1|NP1L1_PONAB) 1.90 8.7 100.0% feature · violin
Cluster 41 5 XP_065643936.1 (g27998.t1) 3.69 8.7 100.0% feature · violin
Cluster 41 6 XP_065656341.1 (g26616.t3|SRSF4_MOUSE) 1.81 8.6 100.0% feature · violin
Cluster 41 7 XP_065646776.1 (g23110.t1|DX39B_RAT) 2.35 8.5 100.0% feature · violin
Cluster 41 8 XP_065650130.1 (g27825.t1|NLP_DROME) 2.00 8.5 100.0% feature · violin
Cluster 41 9 XP_065672479.1 (g9745.t1|MEP50_PONAB) 2.97 8.4 95.0% feature · violin
Cluster 41 10 XP_065666626.1 (g28312.t1|CH60_CHICK) 2.55 8.3 97.5% feature · violin
Cluster 41 11 XP_065648886.1 (g19918.t1|RL32_RAT) 1.08 8.3 100.0% feature · violin
Cluster 41 12 XP_065646525.1 (g12071.t1|SET_MOUSE) 2.39 8.3 100.0% feature · violin
Cluster 41 13 g385.t1|PERI_HYDVU not mapped 4.10 8.3 85.0% feature · violin
Cluster 41 14 XP_065668913.1 (g16092.t1|RS3A_NEMVE) 1.33 8.3 100.0% feature · violin
Cluster 41 15 XP_065664308.1 (g33806.t1|RAN_BRUMA) 1.87 8.2 100.0% feature · violin
Cluster 41 16 XP_065651848.1 (g196.t1|RLA0_DANRE) 0.96 8.1 100.0% feature · violin
Cluster 41 17 g25169.t1|RL12_RAT not mapped 1.06 8.0 100.0% feature · violin
Cluster 41 18 XP_065666435.1 (g11728.t1|RS13_XENLA) 1.13 8.0 100.0% feature · violin
Cluster 41 19 XP_065675924.1 (g24040.t1|RL28_MOUSE) 1.21 8.0 100.0% feature · violin
Cluster 41 20 XP_065657293.1 (g33550.t1|PCNA_MACFA) 2.86 7.9 97.5% feature · violin
Cluster 41 21 XP_065644367.1 (g25765.t1|DKC1_HUMAN) 2.38 7.9 100.0% feature · violin
Cluster 41 22 g9233.t1|ACTP1_ACTVL not mapped 3.92 7.9 82.5% feature · violin
Cluster 41 23 XP_065676154.1 (g12059.t1|RL15_NEUCR) 1.20 7.8 100.0% feature · violin
Cluster 41 24 XP_065659171.1 (g18421.t1|RSSA_HYDVD) 1.40 7.8 100.0% feature · violin
Cluster 41 25 XP_065647197.1 (g12465.t1|CAPR1_BOVIN) 2.10 7.8 100.0% feature · violin
Cluster 41 26 XP_065646674.1 (g29007.t1|SAFB1_MOUSE) 2.17 7.8 100.0% feature · violin
Cluster 41 27 XP_065654223.1 (g8512.t1) 3.37 7.8 80.0% feature · violin
Cluster 41 28 XP_065644440.1 (g11156.t1|RA1L2_HUMAN) 1.93 7.7 100.0% feature · violin
Cluster 41 29 XP_065662327.1 (g30095.t1|NUCL1_ORYSJ) 1.88 7.7 100.0% feature · violin
Cluster 41 30 XP_065646276.1 (g24376.t1|MCPI_MELCP) 3.44 7.7 80.0% feature · violin
Cluster 41 31 XP_065648653.1 (g15077.t1|YPD9_CAEEL) 3.09 7.7 85.0% feature · violin
Cluster 41 32 XP_065657711.1 (g23802.t1|NANO1_DANRE) 3.74 7.7 80.0% feature · violin
Cluster 41 33 XP_065657145.1 (g31120.t1|DDX4_PELLE) 2.79 7.7 87.5% feature · violin
Cluster 41 34 XP_065651941.1 (g5082.t1|NAF1_MOUSE) 2.60 7.6 95.0% feature · violin
Cluster 41 35 XP_065675369.1 (g24023.t1|LS14B_XENTR) 2.30 7.6 100.0% feature · violin
Cluster 41 36 XP_065669564.1 (g421.t1|RS7_RAT) 1.25 7.6 100.0% feature · violin
Cluster 41 37 XP_065674622.1 (g12522.t1|RL22_CAEEL) 0.99 7.5 100.0% feature · violin
Cluster 41 38 XP_065660114.1 (g312.t1|RL13A_MACFA) 0.98 7.5 100.0% feature · violin
Cluster 41 39 XP_065669373.1 (g20919.t1|RL9_ICTPU) 0.99 7.5 100.0% feature · violin
Cluster 41 40 XP_065643635.1 (g13599.t1|CCNB_HYDVD) 2.94 7.5 87.5% feature · violin
Cluster 41 41 XP_065663904.1 (g14556.t1|RANG_HUMAN) 2.28 7.5 95.0% feature · violin
Cluster 41 42 XP_065659413.1 (g2036.t1|RL27_HIPCM) 0.91 7.4 100.0% feature · violin
Cluster 41 43 XP_065669563.1 (g419.t1|DEK_RAT) 2.59 7.4 97.5% feature · violin
Cluster 41 44 XP_065671523.1 (g15841.t1|EF2_CHICK) 1.11 7.4 100.0% feature · violin
Cluster 41 45 XP_065656296.1 (g4298.t1) 1.30 7.4 100.0% feature · violin
Cluster 41 46 XP_065648996.1 (g1889.t1|RL26_LITLI) 0.83 7.3 100.0% feature · violin
Cluster 41 47 XP_065655468.1 (g31894.t1|NOP58_MACFA) 2.35 7.3 97.5% feature · violin
Cluster 41 48 XP_065662308.1 (g30044.t2|ZN318_MOUSE) 1.37 7.3 100.0% feature · violin
Cluster 41 49 XP_065655293.1 (g2323.t1|SRSF4_MOUSE) 2.05 7.3 95.0% feature · violin
Cluster 41 50 XP_065660658.1 (g25813.t1|RBM25_HUMAN) 1.80 7.3 100.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 3 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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