Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g24535.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 37 1 XP_065676831.1 (g30462.t1) 11.75 29.0 100.0% feature · violin
Cluster 37 2 g4770.t1|HTRA3_HUMAN not mapped 11.78 28.9 99.6% feature · violin
Cluster 37 3 XP_065654311.1 (g23344.t1|ANPRA_HUMAN) 11.39 27.9 96.5% feature · violin
Cluster 37 4 g24535.t1 not mapped 9.44 27.3 94.7% feature · violin
Cluster 37 5 XP_065657324.1 (g1379.t1|CALB1_CHICK) 7.79 27.1 95.4% feature · violin
Cluster 37 6 XP_065662047.1 (g4038.t1|PRFA_POLPE) 10.42 26.2 90.5% feature · violin
Cluster 37 7 g28682.t1|CALM_METSE not mapped 4.65 25.4 96.5% feature · violin
Cluster 37 8 g12551.t1 not mapped 6.70 25.4 91.9% feature · violin
Cluster 37 9 XP_065646886.1 (g11736.t1|NOT2_XENLA) 8.53 24.5 85.2% feature · violin
Cluster 37 10 g17407.t1 not mapped 7.20 24.1 85.2% feature · violin
Cluster 37 11 g33076.t1|TBA1C_MOUSE not mapped 5.89 23.1 87.3% feature · violin
Cluster 37 12 g24271.t1|TBA1_PARLI not mapped 3.96 21.9 91.2% feature · violin
Cluster 37 13 XP_065664905.1 (g3299.t1|U390_DANRE) 4.37 21.2 81.7% feature · violin
Cluster 37 14 XP_065672406.1 (g20653.t1|ZC4H2_MOUSE) 8.29 20.8 72.2% feature · violin
Cluster 37 15 g15745.t1 not mapped 8.22 19.9 69.4% feature · violin
Cluster 37 16 XP_065651797.1 (g24233.t1|LITAF_RAT) 9.35 18.8 65.1% feature · violin
Cluster 37 17 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 2.38 18.3 85.2% feature · violin
Cluster 37 18 XP_065676676.1 (g16574.t1|CNTP5_CANLF) 5.63 18.0 65.1% feature · violin
Cluster 37 19 g16168.t1|GRP78_CHICK not mapped 1.99 17.1 88.7% feature · violin
Cluster 37 20 XP_065654100.1 (g25164.t1) 5.96 17.1 61.3% feature · violin
Cluster 37 21 g14331.t1 not mapped 6.91 17.1 60.6% feature · violin
Cluster 37 22 XP_065657157.1 (g24822.t1|CALR_RABIT) 0.90 16.7 98.9% feature · violin
Cluster 37 23 XP_065670346.1 (g10296.t1|TIMP3_SCYTO) 5.76 16.1 58.5% feature · violin
Cluster 37 24 g12999.t1|CALM_METSE not mapped 1.08 16.1 88.7% feature · violin
Cluster 37 25 XP_065649132.1 (g24667.t1|FAXC_MOUSE) 1.43 15.6 87.7% feature · violin
Cluster 37 26 g26393.t1 not mapped 3.19 15.4 68.0% feature · violin
Cluster 37 27 g28847.t1|TBA3_RAT not mapped 1.63 15.0 80.3% feature · violin
Cluster 37 28 g27803.t1 not mapped 5.61 14.9 53.9% feature · violin
Cluster 37 29 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 2.70 14.7 71.1% feature · violin
Cluster 37 30 g1671.t1 not mapped 6.02 14.3 51.1% feature · violin
Cluster 37 31 g10299.t1|TIMP3_HORSE not mapped 5.32 14.3 52.5% feature · violin
Cluster 37 32 g6690.t1 not mapped 3.60 13.9 61.3% feature · violin
Cluster 37 33 XP_065655307.1 (g2356.t1|ANO7_MOUSE) 4.39 13.7 53.5% feature · violin
Cluster 37 34 g6753.t1|TBB4B_MOUSE not mapped 2.64 13.4 69.7% feature · violin
Cluster 37 35 g30274.t1 not mapped 4.55 13.4 50.7% feature · violin
Cluster 37 36 XP_065669747.1 (g4435.t1|NECB_HYDVU) 2.21 13.4 68.7% feature · violin
Cluster 37 37 XP_065644365.1 (g25762.t1|A4_CAEEL) 1.85 13.4 82.0% feature · violin
Cluster 37 38 g7357.t1 not mapped 7.87 13.4 46.5% feature · violin
Cluster 37 39 XP_065658348.1 (g7355.t1) 2.24 13.2 67.3% feature · violin
Cluster 37 40 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 3.98 13.2 52.1% feature · violin
Cluster 37 41 XP_065644642.1 (g10581.t1|H2A_ONCMY) 2.54 13.1 68.0% feature · violin
Cluster 37 42 XP_065657028.1 (g29670.t1|ENPL_BOVIN) 1.14 13.0 84.5% feature · violin
Cluster 37 43 XP_065652235.1 (g2415.t1|CALL5_HUMAN) 9.08 13.0 45.1% feature · violin
Cluster 37 44 g15487.t1|CALM_SCHPO not mapped 6.10 13.0 46.1% feature · violin
Cluster 37 45 XP_065654077.1 (g25156.t1) 5.63 12.9 46.5% feature · violin
Cluster 37 46 XP_065676018.1 (g6751.t1|TBB4_XENLA) 3.71 12.9 54.2% feature · violin
Cluster 37 47 gfp.t1 not mapped 4.33 12.8 49.3% feature · violin
Cluster 37 48 g30038.t1 not mapped 4.81 12.7 48.2% feature · violin
Cluster 37 49 g8607.t1|AST5_DROME not mapped 5.31 12.7 46.1% feature · violin
Cluster 37 50 XP_065651309.1 (g11236.t1|NAC2_MOUSE) 5.02 12.5 46.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 24 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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