Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g25042.t1|KCD16_MOUSE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 19 1 g14708.t1 not mapped 11.67 29.8 99.3% feature · violin
Cluster 19 2 XP_065663400.1 (g24329.t1|LWA_HYDEC) 10.65 29.6 100.0% feature · violin
Cluster 19 3 XP_065665852.1 (g11313.t1) 8.88 29.6 100.0% feature · violin
Cluster 19 4 XP_065653399.1 (g25710.t1) 7.11 26.9 95.1% feature · violin
Cluster 19 5 g33076.t1|TBA1C_MOUSE not mapped 6.20 24.7 88.9% feature · violin
Cluster 19 6 XP_065657198.1 (g24768.t1|HMCN1_MOUSE) 6.38 22.6 78.0% feature · violin
Cluster 19 7 g6690.t1 not mapped 5.74 22.4 82.3% feature · violin
Cluster 19 8 XP_065661592.1 (g15690.t1|NAS13_CAEEL) 6.94 20.5 70.2% feature · violin
Cluster 19 9 g30038.t1 not mapped 6.88 19.8 68.9% feature · violin
Cluster 19 10 g6753.t1|TBB4B_MOUSE not mapped 3.76 19.4 82.3% feature · violin
Cluster 19 11 g12551.t1 not mapped 5.20 19.3 70.8% feature · violin
Cluster 19 12 g4656.t1 not mapped 7.25 17.8 60.7% feature · violin
Cluster 19 13 g24271.t1|TBA1_PARLI not mapped 3.02 17.5 81.3% feature · violin
Cluster 19 14 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 4.52 16.6 61.3% feature · violin
Cluster 19 15 XP_065649132.1 (g24667.t1|FAXC_MOUSE) 1.50 16.3 89.8% feature · violin
Cluster 19 16 XP_065661157.1 (g26846.t1) 5.39 15.9 57.4% feature · violin
Cluster 19 17 g28682.t1|CALM_METSE not mapped 2.78 15.8 76.7% feature · violin
Cluster 19 18 XP_065643638.1 (g13730.t1|NCAH_DROME) 4.93 15.6 57.0% feature · violin
Cluster 19 19 XP_065676018.1 (g6751.t1|TBB4_XENLA) 4.01 15.2 60.0% feature · violin
Cluster 19 20 g28847.t1|TBA3_RAT not mapped 1.54 14.6 80.3% feature · violin
Cluster 19 21 g14726.t1 not mapped 7.64 14.4 49.8% feature · violin
Cluster 19 22 XP_065669747.1 (g4435.t1|NECB_HYDVU) 2.27 14.0 69.5% feature · violin
Cluster 19 23 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 2.49 13.9 65.6% feature · violin
Cluster 19 24 XP_065672592.1 (g32494.t2) 2.27 13.6 67.5% feature · violin
Cluster 19 25 g32222.t1 not mapped 3.94 13.5 52.5% feature · violin
Cluster 19 26 g3704.t1|FRIS_LYMST not mapped 0.98 13.3 94.1% feature · violin
Cluster 19 27 XP_065656486.1 (g31462.t1|ACT_HYDVU) 0.92 12.8 97.0% feature · violin
Cluster 19 28 XP_065670465.1 (g3004.t1) 8.88 12.2 40.7% feature · violin
Cluster 19 29 g26816.t1 not mapped 5.67 12.1 42.0% feature · violin
Cluster 19 30 XP_065669386.1 (g20911.t1|GATA2_XENLA) 5.78 12.1 42.3% feature · violin
Cluster 19 31 XP_065672925.1 (g20647.t1|USOM5_ACRMI) 5.10 11.9 42.3% feature · violin
Cluster 19 32 XP_065659836.1 (g22169.t1) 6.70 11.9 41.0% feature · violin
Cluster 19 33 XP_065654691.1 (g15158.t1|NDF1_DANRE) 8.78 11.7 39.0% feature · violin
Cluster 19 34 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 1.30 11.5 76.4% feature · violin
Cluster 19 35 XP_065665942.1 (g33079.t1|ACT_CYAM1) 4.76 11.3 40.3% feature · violin
Cluster 19 36 XP_065660808.1 (g16854.t1|CNRP1_RAT) 5.79 11.3 39.0% feature · violin
Cluster 19 37 XP_065644365.1 (g25762.t1|A4_CAEEL) 1.51 11.3 80.0% feature · violin
Cluster 19 38 XP_065669351.1 (g25127.t1|DMTA2_MONAL) 4.57 11.2 40.7% feature · violin
Cluster 19 39 g1075.t1 not mapped 4.05 11.1 41.6% feature · violin
Cluster 19 40 g30274.t1 not mapped 3.74 10.8 41.3% feature · violin
Cluster 19 41 g12999.t1|CALM_METSE not mapped 0.62 10.6 86.9% feature · violin
Cluster 19 42 XP_065674590.1 (g17914.t1|FCA1_TRYRA) 1.00 10.4 82.3% feature · violin
Cluster 19 43 XP_065647204.1 (g12459.t1|FSCN1_HUMAN) 4.08 9.9 37.0% feature · violin
Cluster 19 44 XP_065665123.1 (g15493.t1|OFUT2_MOUSE) 3.48 9.6 42.6% feature · violin
Cluster 19 45 XP_065666542.1 (g4003.t1|PTPR2_RAT) 2.48 9.5 47.9% feature · violin
Cluster 19 46 XP_065669243.1 (g25042.t1|KCD16_MOUSE) 4.37 9.5 34.4% feature · violin
Cluster 19 47 XP_065655307.1 (g2356.t1|ANO7_MOUSE) 3.21 9.3 39.3% feature · violin
Cluster 19 48 XP_065670376.1 (g10055.t1) 4.08 9.3 34.4% feature · violin
Cluster 19 49 XP_065653997.1 (g3804.t1|YUGO_BACSU) 4.93 9.3 33.1% feature · violin
Cluster 19 50 g17004.t1|KPCA_RAT not mapped 2.57 9.2 45.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 18 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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