Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g25376.t1|CATL_DROME is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 14 1 XP_065644368.1 (g25767.t1|FRIH_TREBE) 5.47 37.3 100.0% feature · violin
Cluster 14 2 g4475.t1 not mapped 4.61 36.7 99.6% feature · violin
Cluster 14 3 g27119.t1 not mapped 4.74 34.4 99.8% feature · violin
Cluster 14 4 g13904.t1 not mapped 4.30 33.6 99.6% feature · violin
Cluster 14 5 g25376.t1|CATL_DROME not mapped 4.46 33.0 99.5% feature · violin
Cluster 14 6 XP_065676465.1 (g24294.t1|TEST_MOUSE) 4.59 33.0 89.0% feature · violin
Cluster 14 7 XP_065674785.1 (g6754.t1) 4.73 32.6 99.8% feature · violin
Cluster 14 8 XP_065676234.1 (g30214.t1|HSP32_SCHPO) 3.90 32.5 94.2% feature · violin
Cluster 14 9 XP_065668398.1 (g10382.t1) 5.48 32.3 100.0% feature · violin
Cluster 14 10 g874.t1 not mapped 4.69 32.3 99.6% feature · violin
Cluster 14 11 g28515.t1|CATL_SARPE not mapped 3.89 32.1 98.2% feature · violin
Cluster 14 12 g7977.t1|MMP24_MOUSE not mapped 4.27 32.0 95.9% feature · violin
Cluster 14 13 XP_065671591.1 (g3221.t1|FGRL1_CHICK) 4.24 32.0 89.0% feature · violin
Cluster 14 14 XP_065657017.1 (g24193.t1) 5.25 31.8 82.7% feature · violin
Cluster 14 15 XP_065672827.1 (g31626.t1) 5.25 31.6 100.0% feature · violin
Cluster 14 16 XP_065668040.1 (g13856.t1) 3.81 31.4 94.8% feature · violin
Cluster 14 17 XP_065649261.1 (g17677.t1) 4.28 31.4 99.1% feature · violin
Cluster 14 18 g16157.t1 not mapped 4.63 31.4 100.0% feature · violin
Cluster 14 19 XP_065666462.1 (g23901.t1|LAC2_BOTFU) 4.00 31.4 93.3% feature · violin
Cluster 14 20 XP_065643179.1 (g25737.t1) 3.97 31.3 96.6% feature · violin
Cluster 14 21 g17678.t1 not mapped 4.38 31.2 99.5% feature · violin
Cluster 14 22 XP_065653418.1 (g28430.t1) 4.98 31.1 99.8% feature · violin
Cluster 14 23 XP_065651805.1 (g24237.t1|CATB_RAT) 3.21 30.8 99.1% feature · violin
Cluster 14 24 g4335.t1|CATL_DROME not mapped 4.68 30.4 100.0% feature · violin
Cluster 14 25 g28429.t1 not mapped 4.39 30.4 99.3% feature · violin
Cluster 14 26 XP_065644864.1 (g30305.t1|NPC2_DROME) 3.69 30.3 89.5% feature · violin
Cluster 14 27 g17940.t1|MYPH_ECHGR not mapped 3.95 30.2 98.6% feature · violin
Cluster 14 28 XP_065651485.1 (g27363.t1|ODP2_HUMAN) 2.87 29.1 89.5% feature · violin
Cluster 14 29 XP_065656069.1 (g7648.t1) 3.61 29.0 95.0% feature · violin
Cluster 14 30 XP_065646705.1 (g26427.t1|GRM3_MOUSE) 3.54 28.9 98.9% feature · violin
Cluster 14 31 XP_065670751.1 (g31685.t1|CFAD_DICDI) 3.40 28.8 96.8% feature · violin
Cluster 14 32 g4334.t1|CATL_DROME not mapped 3.59 28.8 95.9% feature · violin
Cluster 14 33 XP_065652153.1 (g26446.t2|ERGI3_DANRE) 2.79 28.7 96.0% feature · violin
Cluster 14 34 XP_065653416.1 (g7367.t1) 3.53 28.7 89.0% feature · violin
Cluster 14 35 XP_065662091.1 (g7738.t1) 3.61 28.7 87.6% feature · violin
Cluster 14 36 g29449.t1|MP20_DROME not mapped 3.74 28.5 98.6% feature · violin
Cluster 14 37 g7609.t1|CATL_DROME not mapped 3.55 28.3 94.8% feature · violin
Cluster 14 38 g8497.t1|CO1A2_LITCT not mapped 3.26 27.4 94.2% feature · violin
Cluster 14 39 XP_065653299.1 (g4544.t1|LPHN_DROGR) 4.44 26.7 80.9% feature · violin
Cluster 14 40 XP_065642807.1 (g18444.t1|GGT1_RAT) 3.94 26.7 73.9% feature · violin
Cluster 14 41 XP_065663934.1 (g15046.t1|UN93A_XENLA) 4.30 26.5 71.7% feature · violin
Cluster 14 42 g7621.t1|CATL_DROME not mapped 2.36 26.0 98.9% feature · violin
Cluster 14 43 XP_065670426.1 (g30709.t1|GILT_BOVIN) 3.16 26.0 82.7% feature · violin
Cluster 14 44 XP_065663384.1 (g24349.t1) 4.48 26.0 69.9% feature · violin
Cluster 14 45 XP_065644392.1 (g745.t1) 3.39 25.8 96.8% feature · violin
Cluster 14 46 XP_065658021.1 (g24191.t1|FA5_BOVIN) 4.38 25.5 69.0% feature · violin
Cluster 14 47 g11352.t1|CO4A1_DROME not mapped 3.05 25.3 83.1% feature · violin
Cluster 14 48 XP_065670736.1 (g9835.t1|AZIN2_XENLA) 1.41 25.2 99.6% feature · violin
Cluster 14 49 g18321.t1 not mapped 2.75 25.1 86.1% feature · violin
Cluster 14 50 g7302.t1|FRAS1_HUMAN not mapped 3.02 24.8 79.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 20 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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