Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g25762.t1|A4_CAEEL is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 31 1 g6753.t1|TBB4B_MOUSE not mapped 7.77 19.2 99.2% feature · violin
Cluster 31 2 g27779.t1 not mapped 8.39 19.0 97.7% feature · violin
Cluster 31 3 g20996.t1 not mapped 8.30 18.8 96.2% feature · violin
Cluster 31 4 g22533.t1|TBA1C_HUMAN not mapped 9.25 18.8 95.5% feature · violin
Cluster 31 5 g24271.t1|TBA1_PARLI not mapped 6.15 18.6 99.2% feature · violin
Cluster 31 6 XP_065648971.1 (g5843.t1|TXNIP_RAT) 7.51 18.4 95.5% feature · violin
Cluster 31 7 XP_065651597.1 (g18385.t1|GRDN_HUMAN) 7.54 17.7 92.4% feature · violin
Cluster 31 8 XP_065671102.1 (g17392.t1|SAXO1_MACFA) 7.55 17.6 90.9% feature · violin
Cluster 31 9 g33298.t1 not mapped 8.76 17.3 87.9% feature · violin
Cluster 31 10 g18384.t1 not mapped 7.65 16.9 87.9% feature · violin
Cluster 31 11 XP_065651812.1 (g24241.t1|EMAL4_XENTR) 6.97 16.9 87.9% feature · violin
Cluster 31 12 XP_065644095.1 (g19253.t1|CALB2_RAT) 8.17 16.6 85.6% feature · violin
Cluster 31 13 XP_065660168.1 (g6418.t1|TGMH_TACTR) 6.84 16.5 85.6% feature · violin
Cluster 31 14 XP_065645040.1 (g3699.t1) 7.12 16.3 84.8% feature · violin
Cluster 31 15 XP_065652018.1 (g24483.t1|DCC_MOUSE) 6.70 16.0 83.3% feature · violin
Cluster 31 16 XP_065656214.1 (g7626.t1|CALM_MACPY) 7.05 16.0 82.6% feature · violin
Cluster 31 17 XP_065651841.1 (g210.t1) 6.31 16.0 84.1% feature · violin
Cluster 31 18 XP_065644365.1 (g25762.t1|A4_CAEEL) 3.29 15.4 97.0% feature · violin
Cluster 31 19 XP_065673157.1 (g33251.t1|PRB1_ARATH) 6.90 14.7 76.5% feature · violin
Cluster 31 20 XP_065656338.1 (g26620.t1|AVIL_HUMAN) 6.18 14.7 77.3% feature · violin
Cluster 31 21 XP_065652732.1 (g24536.t1|CALMF_NAEGR) 9.12 14.7 74.2% feature · violin
Cluster 31 22 g13218.t2|UMPS_TOBAC not mapped 6.59 14.6 75.8% feature · violin
Cluster 31 23 g6690.t1 not mapped 4.71 14.6 86.4% feature · violin
Cluster 31 24 XP_065670205.1 (g31231.t2|PHAR4_CHICK) 6.84 14.2 74.2% feature · violin
Cluster 31 25 XP_065669671.1 (g12223.t1|MYLIP_RAT) 4.34 14.2 81.1% feature · violin
Cluster 31 26 g17917.t1|FCA1_TRYRA not mapped 6.00 14.1 75.8% feature · violin
Cluster 31 27 XP_065670259.1 (g23859.t1|VILI_CHICK) 7.37 13.2 67.4% feature · violin
Cluster 31 28 g12999.t1|CALM_METSE not mapped 1.56 13.1 93.9% feature · violin
Cluster 31 29 XP_065652464.1 (g23011.t1|SPAT6_HUMAN) 5.86 13.1 69.7% feature · violin
Cluster 31 30 XP_065674695.1 (g27778.t1|LAMC_DROME) 5.81 13.0 69.7% feature · violin
Cluster 31 31 XP_065672855.1 (g14055.t1) 6.04 12.9 68.2% feature · violin
Cluster 31 32 g33456.t1|WDR86_HUMAN not mapped 6.01 12.9 67.4% feature · violin
Cluster 31 33 XP_065652236.1 (g2412.t1|CALMS_CHICK) 8.51 12.8 65.2% feature · violin
Cluster 31 34 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 2.44 12.8 89.4% feature · violin
Cluster 31 35 XP_065649574.1 (g27082.t1|RIMB2_MOUSE) 5.51 12.8 69.7% feature · violin
Cluster 31 36 XP_065648761.1 (g21147.t1|DCAM_XENLA) 3.83 12.8 79.5% feature · violin
Cluster 31 37 XP_065670611.1 (g21066.t1) 7.70 12.7 65.2% feature · violin
Cluster 31 38 XP_065652416.1 (g11091.t1|TRIB2_HUMAN) 3.22 12.6 79.5% feature · violin
Cluster 31 39 XP_065662083.1 (g10604.t1|CEBPA_HUMAN) 2.10 12.5 95.5% feature · violin
Cluster 31 40 g86.t1 not mapped 8.74 12.4 62.9% feature · violin
Cluster 31 41 XP_065670015.1 (g949.t1|PKD2_BOVIN) 4.42 12.3 70.5% feature · violin
Cluster 31 42 g28861.t1 not mapped 7.85 12.3 62.9% feature · violin
Cluster 31 43 XP_065672596.1 (g32490.t1) 5.12 11.9 65.2% feature · violin
Cluster 31 44 g14913.t1 not mapped 6.20 11.7 61.4% feature · violin
Cluster 31 45 XP_065660881.1 (g21670.t1|ZFAN6_PONAB) 1.85 11.7 88.6% feature · violin
Cluster 31 46 g25865.t1 not mapped 6.99 11.5 59.1% feature · violin
Cluster 31 47 XP_065659325.1 (g17442.t1) 5.86 11.5 60.6% feature · violin
Cluster 31 48 g28847.t1|TBA3_RAT not mapped 1.93 11.5 89.4% feature · violin
Cluster 31 49 XP_065656234.1 (g33689.t1|GBRL2_RAT) 2.75 11.5 78.8% feature · violin
Cluster 31 50 g4324.t1|ARF_CANAL not mapped 6.07 11.4 60.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 18 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP