Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g27461.t1|ZNT1_MACFA is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 36 1 XP_065675067.1 (g24035.t1) 8.06 14.4 98.6% feature · violin
Cluster 36 2 XP_065662881.1 (g9841.t1|TCF15_MESAU) 7.99 13.8 93.2% feature · violin
Cluster 36 3 g27457.t1|ZRC1_YEAST not mapped 5.71 13.6 94.6% feature · violin
Cluster 36 4 g28273.t1 not mapped 5.41 13.5 95.9% feature · violin
Cluster 36 5 XP_065648342.1 (g26232.t1|FAXC_RAT) 4.43 13.5 100.0% feature · violin
Cluster 36 6 XP_065657745.1 (g18565.t1|Y284L_PBCV1) 4.34 13.1 98.6% feature · violin
Cluster 36 7 XP_065654185.1 (g10256.t1|CELR2_HUMAN) 5.50 13.0 91.9% feature · violin
Cluster 36 8 g22934.t1 not mapped 4.52 12.9 93.2% feature · violin
Cluster 36 9 XP_065646879.1 (g11745.t1|MYPT1_CHICK) 4.21 12.8 94.6% feature · violin
Cluster 36 10 XP_065656885.1 (g5179.t1) 4.19 12.7 100.0% feature · violin
Cluster 36 11 g29199.t1 not mapped 5.75 12.6 87.8% feature · violin
Cluster 36 12 XP_065659901.1 (g13405.t1|PCR4_ARATH) 4.38 12.6 94.6% feature · violin
Cluster 36 13 XP_065648185.1 (g6807.t1) 4.86 12.5 89.2% feature · violin
Cluster 36 14 g31502.t1 not mapped 4.15 12.4 98.6% feature · violin
Cluster 36 15 XP_065648392.1 (g13929.t1|5NTC_PONAB) 4.01 12.3 98.6% feature · violin
Cluster 36 16 XP_065674689.1 (g20340.t1) 4.57 12.1 93.2% feature · violin
Cluster 36 17 g10299.t1|TIMP3_HORSE not mapped 7.69 12.1 83.8% feature · violin
Cluster 36 18 g3710.t2|ANTA_HYDVU not mapped 5.52 12.1 85.1% feature · violin
Cluster 36 19 XP_065656939.1 (g19664.t1) 3.75 12.0 98.6% feature · violin
Cluster 36 20 g33794.t1|MYPH_ECHGR not mapped 3.18 12.0 98.6% feature · violin
Cluster 36 21 g21873.t1|FRIS_LYMST not mapped 3.81 12.0 100.0% feature · violin
Cluster 36 22 XP_065656510.1 (g7252.t1|LTBP4_HUMAN) 3.73 11.9 94.6% feature · violin
Cluster 36 23 g17994.t1|TBA_XENLA not mapped 3.82 11.9 100.0% feature · violin
Cluster 36 24 XP_065651427.1 (g8637.t1) 3.62 11.9 94.6% feature · violin
Cluster 36 25 XP_065653852.1 (g20377.t1) 3.64 11.8 98.6% feature · violin
Cluster 36 26 XP_065645034.1 (g15636.t1|FRIS_LYMST) 2.34 11.8 100.0% feature · violin
Cluster 36 27 g6753.t1|TBB4B_MOUSE not mapped 4.68 11.7 93.2% feature · violin
Cluster 36 28 XP_065656952.1 (g26642.t1|FBN2_MOUSE) 3.70 11.7 95.9% feature · violin
Cluster 36 29 g12139.t1 not mapped 4.11 11.7 87.8% feature · violin
Cluster 36 30 XP_065656486.1 (g31462.t1|ACT_HYDVU) 1.73 11.5 100.0% feature · violin
Cluster 36 31 XP_065655628.1 (g1302.t1) 3.65 11.5 94.6% feature · violin
Cluster 36 32 g20995.t1|GST_NOTSL not mapped 4.10 11.3 98.6% feature · violin
Cluster 36 33 g12471.t1 not mapped 3.43 11.2 94.6% feature · violin
Cluster 36 34 XP_065649402.1 (g25005.t1|AB22G_ARATH) 5.22 11.2 78.4% feature · violin
Cluster 36 35 g5410.t1 not mapped 4.51 11.1 82.4% feature · violin
Cluster 36 36 XP_065661376.1 (g30822.t1|FBN1_MOUSE) 3.42 11.0 94.6% feature · violin
Cluster 36 37 g7994.t1|FRIH_TRENE not mapped 1.96 10.9 100.0% feature · violin
Cluster 36 38 XP_065655592.1 (g11471.t1|CALM_PLAFA) 4.05 10.9 81.1% feature · violin
Cluster 36 39 XP_065648271.1 (g19496.t1|CRIP1_RAT) 3.11 10.8 93.2% feature · violin
Cluster 36 40 XP_065673663.1 (g27461.t1|ZNT1_MACFA) 6.13 10.8 74.3% feature · violin
Cluster 36 41 XP_065655032.1 (g7418.t1|MARH2_DANRE) 4.58 10.8 78.4% feature · violin
Cluster 36 42 XP_065646936.1 (g23065.t1|KAD5_BOVIN) 3.22 10.7 89.2% feature · violin
Cluster 36 43 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 3.15 10.7 98.6% feature · violin
Cluster 36 44 g4632.t1 not mapped 4.97 10.7 75.7% feature · violin
Cluster 36 45 XP_065651356.1 (g28962.t1|AZRB_BACOY) 2.13 10.7 100.0% feature · violin
Cluster 36 46 XP_065649240.1 (g17637.t2|TRPA1_CAEEL) 4.18 10.7 78.4% feature · violin
Cluster 36 47 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 2.71 10.6 94.6% feature · violin
Cluster 36 48 XP_065648035.1 (g24401.t1|MEOX2_HUMAN) 9.41 10.6 71.6% feature · violin
Cluster 36 49 g11604.t1 not mapped 3.64 10.6 83.8% feature · violin
Cluster 36 50 g31922.t1|INX4_DROME not mapped 2.65 10.6 100.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 19 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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