Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g27996.t1|RS25_BRABE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 23 1 XP_065662327.1 (g30095.t1|NUCL1_ORYSJ) 2.37 17.8 100.0% feature · violin
Cluster 23 2 XP_065643934.1 (g27996.t1|RS25_BRABE) 0.97 17.0 100.0% feature · violin
Cluster 23 3 XP_065648996.1 (g1889.t1|RL26_LITLI) 0.97 16.6 100.0% feature · violin
Cluster 23 4 XP_065659606.1 (g8307.t1|NH2L1_XENTR) 2.55 16.5 98.6% feature · violin
Cluster 23 5 XP_065666869.1 (g2110.t1|RL23_DROME) 1.01 16.5 100.0% feature · violin
Cluster 23 6 XP_065666664.1 (g28342.t1|NOLC1_RAT) 2.46 16.4 100.0% feature · violin
Cluster 23 7 XP_065659413.1 (g2036.t1|RL27_HIPCM) 1.03 16.4 100.0% feature · violin
Cluster 23 8 g18807.t1|RL37A_YEAST not mapped 1.43 16.2 100.0% feature · violin
Cluster 23 9 XP_065649434.1 (g4594.t1|RS20_RAT) 1.04 16.1 100.0% feature · violin
Cluster 23 10 XP_065660933.1 (g13418.t1|RS27A_DROME) 1.20 16.1 100.0% feature · violin
Cluster 23 11 XP_065650130.1 (g27825.t1|NLP_DROME) 2.04 16.1 100.0% feature · violin
Cluster 23 12 XP_065668716.1 (g10514.t1|THYN1_DANRE) 3.05 16.1 100.0% feature · violin
Cluster 23 13 XP_065660114.1 (g312.t1|RL13A_MACFA) 1.05 16.1 100.0% feature · violin
Cluster 23 14 XP_065653798.1 (g12048.t1|RS11_RAT) 0.90 15.7 100.0% feature · violin
Cluster 23 15 XP_065646714.1 (g21899.t1|RL27A_XENLA) 1.02 15.6 100.0% feature · violin
Cluster 23 16 XP_065648886.1 (g19918.t1|RL32_RAT) 1.07 15.6 100.0% feature · violin
Cluster 23 17 XP_065643936.1 (g27998.t1) 3.42 15.6 97.9% feature · violin
Cluster 23 18 XP_065652469.1 (g32981.t1|RL7_CHICK) 0.86 15.5 100.0% feature · violin
Cluster 23 19 XP_065666435.1 (g11728.t1|RS13_XENLA) 1.14 15.5 100.0% feature · violin
Cluster 23 20 XP_065659171.1 (g18421.t1|RSSA_HYDVD) 1.42 15.4 100.0% feature · violin
Cluster 23 21 XP_065674622.1 (g12522.t1|RL22_CAEEL) 1.00 15.4 100.0% feature · violin
Cluster 23 22 XP_065644367.1 (g25765.t1|DKC1_HUMAN) 2.46 15.4 97.9% feature · violin
Cluster 23 23 XP_065647197.1 (g12465.t1|CAPR1_BOVIN) 2.16 15.4 99.3% feature · violin
Cluster 23 24 XP_065649878.1 (g625.t1|RS4_ICTPU) 0.98 15.4 100.0% feature · violin
Cluster 23 25 XP_065661793.1 (g32304.t1|FOXL1_MOUSE) 3.73 15.3 86.3% feature · violin
Cluster 23 26 XP_065645180.1 (g16547.t1|RL8_XENTR) 1.11 15.3 100.0% feature · violin
Cluster 23 27 g25169.t1|RL12_RAT not mapped 1.04 15.3 100.0% feature · violin
Cluster 23 28 XP_065651980.1 (g28890.t1|RL34_DANRE) 1.19 15.2 100.0% feature · violin
Cluster 23 29 XP_065656341.1 (g26616.t3|SRSF4_MOUSE) 1.65 15.2 99.3% feature · violin
Cluster 23 30 XP_065656296.1 (g4298.t1) 1.41 15.2 100.0% feature · violin
Cluster 23 31 XP_065676236.1 (g4001.t1|RL37A_CRYST) 1.22 15.1 100.0% feature · violin
Cluster 23 32 XP_065668214.1 (g8395.t1|RS23_ICTPU) 0.85 15.1 100.0% feature · violin
Cluster 23 33 XP_065654321.1 (g1513.t1|RS14_PODCA) 1.05 15.1 100.0% feature · violin
Cluster 23 34 XP_065646756.1 (g28668.t1|RL35_RAT) 0.97 15.0 100.0% feature · violin
Cluster 23 35 XP_065653540.1 (g27572.t1|NOP56_HUMAN) 2.35 14.9 97.9% feature · violin
Cluster 23 36 XP_065676154.1 (g12059.t1|RL15_NEUCR) 1.17 14.9 100.0% feature · violin
Cluster 23 37 XP_065646525.1 (g12071.t1|SET_MOUSE) 2.27 14.8 97.3% feature · violin
Cluster 23 38 XP_065665603.1 (g19693.t1|YRBE_BACSU) 2.87 14.8 93.2% feature · violin
Cluster 23 39 XP_065662308.1 (g30044.t2|ZN318_MOUSE) 1.46 14.8 99.3% feature · violin
Cluster 23 40 XP_065666626.1 (g28312.t1|CH60_CHICK) 2.33 14.8 97.3% feature · violin
Cluster 23 41 XP_065663806.1 (g20802.t1|RLA2_CRYST) 0.78 14.8 100.0% feature · violin
Cluster 23 42 XP_065652554.1 (g28842.t1|RL30_BRABE) 1.03 14.7 100.0% feature · violin
Cluster 23 43 XP_065669563.1 (g419.t1|DEK_RAT) 2.82 14.7 95.9% feature · violin
Cluster 23 44 XP_065676834.1 (g14572.t1|AMT3_CAEEL) 0.95 14.6 100.0% feature · violin
Cluster 23 45 XP_065668913.1 (g16092.t1|RS3A_NEMVE) 1.23 14.6 100.0% feature · violin
Cluster 23 46 XP_065652030.1 (g19961.t1|RLA1_DROME) 0.98 14.4 100.0% feature · violin
Cluster 23 47 XP_065651941.1 (g5082.t1|NAF1_MOUSE) 2.68 14.3 89.7% feature · violin
Cluster 23 48 XP_065675924.1 (g24040.t1|RL28_MOUSE) 1.15 14.3 100.0% feature · violin
Cluster 23 49 XP_065647545.1 (g12335.t1|RL5_STYCL) 1.21 14.2 100.0% feature · violin
Cluster 23 50 XP_065670574.1 (g5715.t1|PR40A_HUMAN) 1.80 14.1 98.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 2 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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