Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g29273.t1|GREM1_CHICK is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 27 1 XP_065660988.1 (g33343.t1) 13.18 20.5 100.0% feature · violin
Cluster 27 2 XP_065662060.1 (g4047.t1|CLSPN_HUMAN) 11.41 20.4 100.0% feature · violin
Cluster 27 3 g33337.t1 not mapped 13.75 20.4 99.3% feature · violin
Cluster 27 4 g33329.t1 not mapped 13.05 20.4 99.3% feature · violin
Cluster 27 5 XP_065665248.1 (g7871.t1) 8.69 19.7 98.6% feature · violin
Cluster 27 6 g6690.t1 not mapped 6.96 19.2 99.3% feature · violin
Cluster 27 7 g27032.t1 not mapped 8.48 19.2 95.7% feature · violin
Cluster 27 8 g29685.t1 not mapped 7.83 18.0 89.4% feature · violin
Cluster 27 9 g29273.t1|GREM1_CHICK not mapped 9.47 17.8 87.2% feature · violin
Cluster 27 10 XP_065661789.1 (g32297.t1|QPCTL_BOVIN) 6.55 17.8 89.4% feature · violin
Cluster 27 11 g12139.t1 not mapped 6.17 17.7 89.4% feature · violin
Cluster 27 12 g12551.t1 not mapped 5.98 17.1 90.1% feature · violin
Cluster 27 13 g30825.t1 not mapped 8.02 16.8 83.0% feature · violin
Cluster 27 14 g33076.t1|TBA1C_MOUSE not mapped 5.64 16.5 89.4% feature · violin
Cluster 27 15 XP_065672592.1 (g32494.t2) 3.57 16.3 90.8% feature · violin
Cluster 27 16 g20079.t1 not mapped 5.51 16.2 83.7% feature · violin
Cluster 27 17 g27806.t1 not mapped 6.97 16.2 80.9% feature · violin
Cluster 27 18 XP_065653399.1 (g25710.t1) 4.88 15.9 89.4% feature · violin
Cluster 27 19 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 3.50 15.4 87.2% feature · violin
Cluster 27 20 XP_065676795.1 (g13998.t1|THAP9_HUMAN) 5.83 14.5 74.5% feature · violin
Cluster 27 21 XP_065663408.1 (g17355.t1|CALM_PYTSP) 7.74 13.9 68.8% feature · violin
Cluster 27 22 XP_065668789.1 (g26212.t1|RGS7_BOVIN) 4.83 13.9 74.5% feature · violin
Cluster 27 23 g30274.t1 not mapped 5.21 13.3 69.5% feature · violin
Cluster 27 24 XP_065647437.1 (g11578.t1|NPDC1_HUMAN) 3.28 13.3 78.7% feature · violin
Cluster 27 25 g6753.t1|TBB4B_MOUSE not mapped 3.45 13.2 85.8% feature · violin
Cluster 27 26 XP_065657324.1 (g1379.t1|CALB1_CHICK) 4.50 12.4 68.1% feature · violin
Cluster 27 27 g33330.t1 not mapped 6.15 11.9 61.0% feature · violin
Cluster 27 28 XP_065669351.1 (g25127.t1|DMTA2_MONAL) 5.54 11.9 61.0% feature · violin
Cluster 27 29 XP_065655243.1 (g23284.t1|CACB2_RABIT) 3.84 11.7 66.7% feature · violin
Cluster 27 30 XP_065663510.1 (g23948.t1|T23O_TRICA) 6.89 11.6 57.4% feature · violin
Cluster 27 31 g24271.t1|TBA1_PARLI not mapped 2.75 11.3 81.6% feature · violin
Cluster 27 32 XP_065646480.1 (g22773.t2) 4.68 10.8 57.4% feature · violin
Cluster 27 33 g2925.t1|ASIC1_RAT not mapped 10.03 10.7 52.5% feature · violin
Cluster 27 34 XP_065671132.1 (g15442.t1) 4.12 10.6 58.9% feature · violin
Cluster 27 35 gfp.t1 not mapped 4.55 10.3 56.0% feature · violin
Cluster 27 36 XP_065655982.1 (g1973.t2|KI26A_MOUSE) 4.31 10.3 56.7% feature · violin
Cluster 27 37 g1075.t1 not mapped 4.49 10.2 54.6% feature · violin
Cluster 27 38 XP_065665852.1 (g11313.t1) 2.85 10.1 68.1% feature · violin
Cluster 27 39 XP_065673403.1 (g12476.t1|BAT36_CAEEL) 5.12 10.0 51.8% feature · violin
Cluster 27 40 XP_065655642.1 (g33468.t1|MYLK_RABIT) 6.86 9.6 47.5% feature · violin
Cluster 27 41 g211.t1 not mapped 6.59 9.5 47.5% feature · violin
Cluster 27 42 XP_065673055.1 (g30674.t1|CHAC1_RAT) 2.95 9.5 63.1% feature · violin
Cluster 27 43 g32493.t1 not mapped 5.20 9.5 48.9% feature · violin
Cluster 27 44 XP_065670745.1 (g22186.t1|ADA1A_ORYLA) 5.16 9.4 48.9% feature · violin
Cluster 27 45 XP_065673063.1 (g28461.t1|HCN4_RABIT) 6.95 9.3 46.1% feature · violin
Cluster 27 46 XP_065655584.1 (g7838.t1) 4.35 8.9 48.9% feature · violin
Cluster 27 47 XP_065665090.1 (g6839.t1|HSP70_HYDVU) 2.17 8.8 65.2% feature · violin
Cluster 27 48 g24711.t1 not mapped 7.01 8.7 43.3% feature · violin
Cluster 27 49 XP_065671421.1 (g32922.t1|AMDB_XENLA) 3.47 8.7 51.8% feature · violin
Cluster 27 50 g27803.t1 not mapped 4.50 8.6 45.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 23 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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