Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g29897.t1|KCNA1_MOUSE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 39 1 g18367.t1 not mapped 12.98 26.8 100.0% feature · violin
Cluster 39 2 g13938.t1 not mapped 13.09 26.7 99.6% feature · violin
Cluster 39 3 g12221.t1 not mapped 10.38 26.2 97.9% feature · violin
Cluster 39 4 g18369.t1 not mapped 13.71 26.1 97.5% feature · violin
Cluster 39 5 g15727.t1|YL063_MIMIV not mapped 13.89 25.0 93.4% feature · violin
Cluster 39 6 XP_065665852.1 (g11313.t1) 7.00 24.8 100.0% feature · violin
Cluster 39 7 XP_065676795.1 (g13998.t1|THAP9_HUMAN) 7.86 24.5 92.6% feature · violin
Cluster 39 8 XP_065663649.1 (g23541.t1|DRGX_RAT) 10.36 23.1 86.4% feature · violin
Cluster 39 9 g6690.t1 not mapped 6.38 23.0 92.1% feature · violin
Cluster 39 10 g17407.t1 not mapped 6.73 21.2 81.8% feature · violin
Cluster 39 11 g33076.t1|TBA1C_MOUSE not mapped 5.27 19.8 83.5% feature · violin
Cluster 39 12 g3219.t1|COMA_CONMA not mapped 5.73 19.6 78.9% feature · violin
Cluster 39 13 g6753.t1|TBB4B_MOUSE not mapped 4.10 18.3 83.5% feature · violin
Cluster 39 14 XP_065673228.1 (g12474.t1) 5.08 17.9 72.3% feature · violin
Cluster 39 15 XP_065663083.1 (g25494.t1|GGT1_PIG) 4.63 17.9 73.1% feature · violin
Cluster 39 16 XP_065671556.1 (g3228.t1|OTP_LYTVA) 9.03 17.6 66.1% feature · violin
Cluster 39 17 g28682.t1|CALM_METSE not mapped 3.33 17.6 84.7% feature · violin
Cluster 39 18 XP_065657157.1 (g24822.t1|CALR_RABIT) 1.13 16.7 100.0% feature · violin
Cluster 39 19 g12551.t1 not mapped 4.62 16.3 69.0% feature · violin
Cluster 39 20 g18368.t1 not mapped 13.16 16.2 60.3% feature · violin
Cluster 39 21 g3220.t1|COMA_CONMA not mapped 4.35 15.4 66.9% feature · violin
Cluster 39 22 XP_065662288.1 (g30023.t1|MLRP1_ACRMI) 7.24 15.2 57.9% feature · violin
Cluster 39 23 XP_065653644.1 (g15291.t1|RLBP1_HUMAN) 5.46 14.5 57.0% feature · violin
Cluster 39 24 XP_065655148.1 (g21794.t1|PSMD7_DROME) 2.21 14.3 74.4% feature · violin
Cluster 39 25 XP_065655867.1 (g15147.t1|PGFS_TRYCC) 4.48 13.2 55.4% feature · violin
Cluster 39 26 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 1.66 13.0 80.6% feature · violin
Cluster 39 27 g26890.t1 not mapped 7.32 13.0 49.6% feature · violin
Cluster 39 28 XP_065657273.1 (g33500.t1|PRY1_YEAST) 4.42 13.0 53.3% feature · violin
Cluster 39 29 g9973.t1 not mapped 5.39 12.6 49.6% feature · violin
Cluster 39 30 XP_065657270.1 (g33504.t1|PI4KA_BOVIN) 3.75 11.9 52.9% feature · violin
Cluster 39 31 XP_065669351.1 (g25127.t1|DMTA2_MONAL) 4.75 11.5 46.3% feature · violin
Cluster 39 32 XP_065656214.1 (g7626.t1|CALM_MACPY) 4.72 11.4 46.7% feature · violin
Cluster 39 33 g24271.t1|TBA1_PARLI not mapped 2.19 11.3 71.5% feature · violin
Cluster 39 34 g4469.t1 not mapped 8.77 11.1 41.7% feature · violin
Cluster 39 35 XP_065643460.1 (g26787.t1) 3.83 10.6 46.3% feature · violin
Cluster 39 36 XP_065656945.1 (g19645.t1) 5.16 10.5 41.3% feature · violin
Cluster 39 37 XP_065669147.1 (g18882.t1|SYN2_MOUSE) 4.56 10.4 42.1% feature · violin
Cluster 39 38 g23868.t1 not mapped 5.78 10.2 39.7% feature · violin
Cluster 39 39 g1075.t1 not mapped 3.99 10.1 42.6% feature · violin
Cluster 39 40 g3704.t1|FRIS_LYMST not mapped 0.74 10.1 94.6% feature · violin
Cluster 39 41 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 3.44 10.1 45.0% feature · violin
Cluster 39 42 g28847.t1|TBA3_RAT not mapped 0.99 9.9 75.2% feature · violin
Cluster 39 43 XP_065651809.1 (g24240.t1) 3.99 9.8 43.4% feature · violin
Cluster 39 44 XP_065650417.1 (g7494.t1|RADI_BOVIN) 0.73 9.7 82.6% feature · violin
Cluster 39 45 XP_065657074.1 (g29897.t1|KCNA1_MOUSE) 5.84 9.5 36.8% feature · violin
Cluster 39 46 XP_065671591.1 (g3221.t1|FGRL1_CHICK) 2.84 9.4 46.7% feature · violin
Cluster 39 47 g19229.t1 not mapped 4.08 9.2 38.4% feature · violin
Cluster 39 48 g30274.t1 not mapped 3.71 9.2 39.7% feature · violin
Cluster 39 49 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 1.87 9.1 57.0% feature · violin
Cluster 39 50 XP_065676018.1 (g6751.t1|TBB4_XENLA) 3.07 9.1 45.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 24 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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