Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g30370.t1|CIRBP_LITCT is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 40 1 XP_065670346.1 (g10296.t1|TIMP3_SCYTO) 9.83 19.6 100.0% feature · violin
Cluster 40 2 g10299.t1|TIMP3_HORSE not mapped 9.42 19.4 99.2% feature · violin
Cluster 40 3 g12976.t1 not mapped 13.32 19.4 97.7% feature · violin
Cluster 40 4 XP_065665852.1 (g11313.t1) 6.91 18.2 100.0% feature · violin
Cluster 40 5 g14373.t1 not mapped 10.61 17.9 90.2% feature · violin
Cluster 40 6 g33076.t1|TBA1C_MOUSE not mapped 6.34 17.2 93.9% feature · violin
Cluster 40 7 g28682.t1|CALM_METSE not mapped 4.63 17.1 94.7% feature · violin
Cluster 40 8 g30038.t1 not mapped 7.93 16.9 87.1% feature · violin
Cluster 40 9 g24924.t1|CER1_HUMAN not mapped 8.51 15.5 78.8% feature · violin
Cluster 40 10 XP_065676795.1 (g13998.t1|THAP9_HUMAN) 6.53 15.1 78.8% feature · violin
Cluster 40 11 g17407.t1 not mapped 6.04 14.7 78.0% feature · violin
Cluster 40 12 XP_065673450.1 (g27436.t1) 7.79 14.7 75.0% feature · violin
Cluster 40 13 g29685.t1 not mapped 7.85 14.6 75.0% feature · violin
Cluster 40 14 g6690.t1 not mapped 4.93 14.2 82.6% feature · violin
Cluster 40 15 g25040.t1 not mapped 6.34 14.2 74.2% feature · violin
Cluster 40 16 XP_065663083.1 (g25494.t1|GGT1_PIG) 4.70 13.8 75.8% feature · violin
Cluster 40 17 XP_065669147.1 (g18882.t1|SYN2_MOUSE) 6.42 13.4 69.7% feature · violin
Cluster 40 18 XP_065645121.1 (g16528.t1) 5.74 13.3 72.7% feature · violin
Cluster 40 19 g29094.t1 not mapped 6.65 13.2 68.2% feature · violin
Cluster 40 20 XP_065657157.1 (g24822.t1|CALR_RABIT) 1.04 12.9 100.0% feature · violin
Cluster 40 21 XP_065673055.1 (g30674.t1|CHAC1_RAT) 4.10 12.0 72.0% feature · violin
Cluster 40 22 g6753.t1|TBB4B_MOUSE not mapped 3.50 11.8 78.0% feature · violin
Cluster 40 23 XP_065661157.1 (g26846.t1) 5.30 11.7 63.6% feature · violin
Cluster 40 24 g3219.t1|COMA_CONMA not mapped 4.21 10.7 61.4% feature · violin
Cluster 40 25 XP_065646878.1 (g11748.t1|NAS13_CAEEL) 2.65 10.2 68.9% feature · violin
Cluster 40 26 XP_065671556.1 (g3228.t1|OTP_LYTVA) 7.07 10.1 51.5% feature · violin
Cluster 40 27 XP_065673696.1 (g21720.t1|ELAV2_XENTR) 4.20 9.8 56.1% feature · violin
Cluster 40 28 XP_065672592.1 (g32494.t2) 2.29 9.7 70.5% feature · violin
Cluster 40 29 XP_065666805.1 (g30370.t1|CIRBP_LITCT) 1.33 8.8 76.5% feature · violin
Cluster 40 30 XP_065662083.1 (g10604.t1|CEBPA_HUMAN) 1.26 8.8 81.1% feature · violin
Cluster 40 31 XP_065653644.1 (g15291.t1|RLBP1_HUMAN) 4.57 8.7 47.7% feature · violin
Cluster 40 32 XP_065657324.1 (g1379.t1|CALB1_CHICK) 3.80 8.5 50.0% feature · violin
Cluster 40 33 XP_065659462.1 (g28606.t1|ATF4_MOUSE) 1.30 8.4 75.0% feature · violin
Cluster 40 34 XP_065646997.1 (g12305.t1|KCNC1_HUMAN) 7.46 8.3 42.4% feature · violin
Cluster 40 35 g15632.t1|VP302_LYCMC not mapped 2.83 8.2 56.8% feature · violin
Cluster 40 36 g19229.t1 not mapped 4.20 7.8 43.2% feature · violin
Cluster 40 37 XP_065656214.1 (g7626.t1|CALM_MACPY) 4.42 7.7 43.2% feature · violin
Cluster 40 38 XP_065666402.1 (g368.t1|PTF1A_DANRE) 10.59 7.5 37.9% feature · violin
Cluster 40 39 XP_065649685.1 (g2140.t1|EGR1_XENTR) 0.91 7.5 76.5% feature · violin
Cluster 40 40 g30594.t1|PDI2_CAEEL not mapped 1.53 7.5 68.9% feature · violin
Cluster 40 41 g6750.t1|TBB_PARLI not mapped 0.56 7.4 88.6% feature · violin
Cluster 40 42 g3704.t1|FRIS_LYMST not mapped 0.70 7.4 93.2% feature · violin
Cluster 40 43 XP_065644087.1 (g21976.t1|DIRA1_HUMAN) 3.82 7.3 43.9% feature · violin
Cluster 40 44 XP_065656945.1 (g19645.t1) 4.94 7.3 39.4% feature · violin
Cluster 40 45 g26349.t1 not mapped 4.20 7.3 41.7% feature · violin
Cluster 40 46 XP_065646332.1 (g5865.t1|ARF12_CAEBR) 0.63 7.0 84.1% feature · violin
Cluster 40 47 g24271.t1|TBA1_PARLI not mapped 1.93 6.9 64.4% feature · violin
Cluster 40 48 g6732.t1|SECG_DICDI not mapped 7.03 6.9 35.6% feature · violin
Cluster 40 49 XP_065651237.1 (g7935.t1|GPR18_AMPAM) 8.11 6.8 34.8% feature · violin
Cluster 40 50 XP_065657374.1 (g31001.t2|KCNAG_CAEEL) 5.07 6.7 35.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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