Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g31502.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 XP_065666533.1 (g11134.t1) 4.93 32.7 98.2% feature · violin
Cluster 10 2 g31502.t1 not mapped 3.88 31.4 96.4% feature · violin
Cluster 10 3 g11543.t1|MYPH_ECHGR not mapped 3.80 29.7 96.3% feature · violin
Cluster 10 4 XP_065653852.1 (g20377.t1) 3.40 29.5 93.8% feature · violin
Cluster 10 5 g21873.t1|FRIS_LYMST not mapped 3.28 28.4 98.6% feature · violin
Cluster 10 6 g33051.t1 not mapped 4.22 28.3 94.3% feature · violin
Cluster 10 7 g20995.t1|GST_NOTSL not mapped 3.61 28.0 94.8% feature · violin
Cluster 10 8 XP_065663515.1 (g15613.t1|HPPD_DANRE) 2.82 27.8 92.1% feature · violin
Cluster 10 9 XP_065653188.1 (g3660.t1) 3.23 27.4 93.9% feature · violin
Cluster 10 10 XP_065644346.1 (g25743.t1) 3.64 27.2 88.4% feature · violin
Cluster 10 11 XP_065659901.1 (g13405.t1|PCR4_ARATH) 3.23 27.0 83.2% feature · violin
Cluster 10 12 g21993.t1|MYS_ARGIR not mapped 3.14 27.0 93.8% feature · violin
Cluster 10 13 g2661.t1|CO5A1_CRILO not mapped 3.90 26.9 85.4% feature · violin
Cluster 10 14 XP_065675067.1 (g24035.t1) 3.55 26.9 84.8% feature · violin
Cluster 10 15 XP_065656939.1 (g19664.t1) 3.09 26.8 88.2% feature · violin
Cluster 10 16 XP_065647362.1 (g27630.t1|THIO_PLAF7) 1.69 26.7 99.8% feature · violin
Cluster 10 17 XP_065651356.1 (g28962.t1|AZRB_BACOY) 1.92 26.3 97.3% feature · violin
Cluster 10 18 XP_065662035.1 (g11131.t1|COMI_DICDI) 3.13 26.3 82.3% feature · violin
Cluster 10 19 XP_065648392.1 (g13929.t1|5NTC_PONAB) 2.96 26.2 95.7% feature · violin
Cluster 10 20 XP_065656885.1 (g5179.t1) 3.13 26.2 95.0% feature · violin
Cluster 10 21 XP_065655917.1 (g29791.t1|TITIN_DROME) 3.04 25.9 93.8% feature · violin
Cluster 10 22 XP_065659687.1 (g21994.t1|MYS_ARGIR) 2.85 25.6 90.7% feature · violin
Cluster 10 23 XP_065645034.1 (g15636.t1|FRIS_LYMST) 1.83 25.6 99.8% feature · violin
Cluster 10 24 g30572.t1|SCRY2_OCTVU not mapped 2.28 25.6 92.3% feature · violin
Cluster 10 25 XP_065657745.1 (g18565.t1|Y284L_PBCV1) 2.87 25.3 84.6% feature · violin
Cluster 10 26 g11572.t1|CO5A1_CRILO not mapped 3.32 25.3 83.2% feature · violin
Cluster 10 27 XP_065661376.1 (g30822.t1|FBN1_MOUSE) 2.86 25.2 86.3% feature · violin
Cluster 10 28 g28273.t1 not mapped 3.30 25.0 75.4% feature · violin
Cluster 10 29 g17953.t1|COHA1_HUMAN not mapped 3.50 25.0 77.9% feature · violin
Cluster 10 30 XP_065655628.1 (g1302.t1) 2.75 24.9 86.3% feature · violin
Cluster 10 31 g12653.t1|GELS2_LUMTE not mapped 2.86 24.9 82.7% feature · violin
Cluster 10 32 XP_065674689.1 (g20340.t1) 3.03 24.8 81.2% feature · violin
Cluster 10 33 XP_065670390.1 (g10044.t2) 2.83 24.7 80.4% feature · violin
Cluster 10 34 XP_065674321.1 (g22636.t1) 2.77 24.3 80.5% feature · violin
Cluster 10 35 g7491.t1|RADI_BOVIN not mapped 2.73 24.3 80.9% feature · violin
Cluster 10 36 XP_065663286.1 (g21825.t1) 2.68 24.2 80.9% feature · violin
Cluster 10 37 g17994.t1|TBA_XENLA not mapped 2.77 24.2 91.2% feature · violin
Cluster 10 38 XP_065648342.1 (g26232.t1|FAXC_RAT) 2.69 24.1 87.7% feature · violin
Cluster 10 39 XP_065656952.1 (g26642.t1|FBN2_MOUSE) 2.72 23.8 82.3% feature · violin
Cluster 10 40 XP_065644028.1 (g22731.t1|LAMP1_HUMAN) 2.70 23.7 77.9% feature · violin
Cluster 10 41 XP_065655619.1 (g4809.t1) 2.67 23.7 79.1% feature · violin
Cluster 10 42 g12471.t1 not mapped 2.62 23.4 81.1% feature · violin
Cluster 10 43 XP_065673791.1 (g22571.t1|NAPEP_BOVIN) 2.22 23.3 97.9% feature · violin
Cluster 10 44 XP_065674649.1 (g12469.t1) 2.48 23.2 80.4% feature · violin
Cluster 10 45 g27651.t1 not mapped 2.46 23.1 81.6% feature · violin
Cluster 10 46 XP_065673637.1 (g449.t1|TMOD3_MOUSE) 2.46 22.8 81.6% feature · violin
Cluster 10 47 XP_065659959.1 (g31590.t1|MYSU_RABIT) 2.38 22.6 79.8% feature · violin
Cluster 10 48 XP_065667815.1 (g22615.t1|FUT5_GORGO) 2.55 22.3 74.6% feature · violin
Cluster 10 49 g33794.t1|MYPH_ECHGR not mapped 2.16 22.3 90.4% feature · violin
Cluster 10 50 XP_065670194.1 (g31235.t1|TPM1_PODCA) 2.15 22.2 98.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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