Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g31728.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 XP_065653188.1 (g3660.t1) 5.11 29.4 99.4% feature · violin
Cluster 11 2 g9819.t1|CSL3_ONCKE not mapped 6.11 28.7 93.7% feature · violin
Cluster 11 3 XP_065674689.1 (g20340.t1) 5.19 28.1 95.1% feature · violin
Cluster 11 4 XP_065659774.1 (g22114.t1) 3.88 27.4 98.9% feature · violin
Cluster 11 5 XP_065666533.1 (g11134.t1) 5.46 27.2 96.9% feature · violin
Cluster 11 6 g31502.t1 not mapped 4.18 26.2 96.3% feature · violin
Cluster 11 7 g3893.t1|ASPGB_ARATH not mapped 5.01 25.9 85.7% feature · violin
Cluster 11 8 g17994.t1|TBA_XENLA not mapped 3.87 25.7 98.6% feature · violin
Cluster 11 9 g11543.t1|MYPH_ECHGR not mapped 4.01 25.0 96.6% feature · violin
Cluster 11 10 XP_065663353.1 (g10697.t1) 3.52 25.0 91.1% feature · violin
Cluster 11 11 XP_065659421.1 (g2033.t1) 6.05 24.6 78.9% feature · violin
Cluster 11 12 g21873.t1|FRIS_LYMST not mapped 3.64 24.6 98.9% feature · violin
Cluster 11 13 XP_065656885.1 (g5179.t1) 3.72 24.5 97.1% feature · violin
Cluster 11 14 XP_065659959.1 (g31590.t1|MYSU_RABIT) 3.72 24.4 88.3% feature · violin
Cluster 11 15 XP_065667815.1 (g22615.t1|FUT5_GORGO) 3.76 24.4 86.6% feature · violin
Cluster 11 16 XP_065674590.1 (g17914.t1|FCA1_TRYRA) 2.19 24.4 99.1% feature · violin
Cluster 11 17 XP_065655917.1 (g29791.t1|TITIN_DROME) 3.67 24.2 95.7% feature · violin
Cluster 11 18 XP_065676464.1 (g31728.t1) 2.90 23.7 92.6% feature · violin
Cluster 11 19 XP_065645044.1 (g3709.t1) 3.43 23.5 91.4% feature · violin
Cluster 11 20 XP_065655628.1 (g1302.t1) 3.53 23.4 89.7% feature · violin
Cluster 11 21 XP_065658084.1 (g1409.t1|TEF_MOUSE) 3.85 23.3 82.0% feature · violin
Cluster 11 22 XP_065659901.1 (g13405.t1|PCR4_ARATH) 3.76 23.3 84.9% feature · violin
Cluster 11 23 g4326.t1 not mapped 4.17 22.9 78.6% feature · violin
Cluster 11 24 XP_065673228.1 (g12474.t1) 3.54 22.6 82.6% feature · violin
Cluster 11 25 XP_065648271.1 (g19496.t1|CRIP1_RAT) 3.20 22.5 86.0% feature · violin
Cluster 11 26 g21993.t1|MYS_ARGIR not mapped 3.52 22.5 90.6% feature · violin
Cluster 11 27 XP_065648392.1 (g13929.t1|5NTC_PONAB) 3.32 22.4 93.1% feature · violin
Cluster 11 28 XP_065674649.1 (g12469.t1) 3.23 22.2 85.1% feature · violin
Cluster 11 29 XP_065662035.1 (g11131.t1|COMI_DICDI) 3.63 22.1 82.0% feature · violin
Cluster 11 30 XP_065672559.1 (g23437.t1|YS51_CAEEL) 2.82 22.0 89.1% feature · violin
Cluster 11 31 XP_065644365.1 (g25762.t1|A4_CAEEL) 2.57 21.9 98.9% feature · violin
Cluster 11 32 XP_065659687.1 (g21994.t1|MYS_ARGIR) 3.28 21.9 90.0% feature · violin
Cluster 11 33 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 2.98 21.9 96.6% feature · violin
Cluster 11 34 XP_065673248.1 (g1718.t1|CHSTB_RAT) 3.42 21.8 81.1% feature · violin
Cluster 11 35 XP_065645034.1 (g15636.t1|FRIS_LYMST) 1.97 21.7 99.4% feature · violin
Cluster 11 36 XP_065663286.1 (g21825.t1) 3.23 21.7 84.3% feature · violin
Cluster 11 37 XP_065651356.1 (g28962.t1|AZRB_BACOY) 1.99 21.5 98.3% feature · violin
Cluster 11 38 XP_065673637.1 (g449.t1|TMOD3_MOUSE) 3.03 21.2 85.4% feature · violin
Cluster 11 39 XP_065663892.1 (g14541.t1|MVP_STRPU) 2.11 21.2 98.6% feature · violin
Cluster 11 40 XP_065668205.1 (g22317.t1|RERG_BOVIN) 3.80 21.2 74.9% feature · violin
Cluster 11 41 g3662.t1 not mapped 3.87 21.1 74.6% feature · violin
Cluster 11 42 XP_065673791.1 (g22571.t1|NAPEP_BOVIN) 2.42 21.0 97.7% feature · violin
Cluster 11 43 g33575.t1 not mapped 3.27 21.0 78.6% feature · violin
Cluster 11 44 XP_065655619.1 (g4809.t1) 3.10 20.8 81.4% feature · violin
Cluster 11 45 g31922.t1|INX4_DROME not mapped 2.42 20.7 98.0% feature · violin
Cluster 11 46 XP_065676304.1 (g2771.t1|APCD1_CHICK) 3.19 20.7 78.9% feature · violin
Cluster 11 47 XP_065652912.1 (g13019.t1|PRPX_HORVU) 4.60 20.7 68.9% feature · violin
Cluster 11 48 XP_065661376.1 (g30822.t1|FBN1_MOUSE) 3.03 20.4 84.6% feature · violin
Cluster 11 49 XP_065646328.1 (g2198.t1|K1958_HUMAN) 4.83 20.3 66.9% feature · violin
Cluster 11 50 XP_065656939.1 (g19664.t1) 3.05 20.2 83.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 11 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP