Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g31952.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 20 1 XP_065650366.1 (g31816.t1) 9.15 44.8 99.0% feature · violin
Cluster 20 2 XP_065648894.1 (g19903.t1) 9.40 44.6 98.7% feature · violin
Cluster 20 3 g27651.t1 not mapped 6.84 44.3 99.9% feature · violin
Cluster 20 4 XP_065670390.1 (g10044.t2) 7.42 44.2 99.7% feature · violin
Cluster 20 5 g2661.t1|CO5A1_CRILO not mapped 8.98 44.2 100.0% feature · violin
Cluster 20 6 g11572.t1|CO5A1_CRILO not mapped 8.32 44.1 100.0% feature · violin
Cluster 20 7 g17953.t1|COHA1_HUMAN not mapped 8.69 43.9 98.9% feature · violin
Cluster 20 8 XP_065665854.1 (g11310.t1) 7.23 43.7 99.2% feature · violin
Cluster 20 9 g28987.t1 not mapped 8.37 43.3 97.3% feature · violin
Cluster 20 10 g33051.t1 not mapped 8.37 43.3 100.0% feature · violin
Cluster 20 11 XP_065649122.1 (g11872.t1|SLB2_DEIAC) 6.91 43.2 97.9% feature · violin
Cluster 20 12 XP_065644346.1 (g25743.t1) 7.43 43.2 100.0% feature · violin
Cluster 20 13 g2657.t1 not mapped 6.79 42.9 99.3% feature · violin
Cluster 20 14 XP_065646225.1 (g1284.t2) 5.91 41.9 95.9% feature · violin
Cluster 20 15 XP_065657328.1 (g1374.t1|GGT1_HUMAN) 6.29 41.4 94.6% feature · violin
Cluster 20 16 XP_065668703.1 (g10499.t3) 6.74 41.2 94.8% feature · violin
Cluster 20 17 XP_065674307.1 (g29480.t1|YJBM_BACSU) 9.21 41.0 90.7% feature · violin
Cluster 20 18 XP_065653174.1 (g31952.t1) 9.42 40.6 90.0% feature · violin
Cluster 20 19 XP_065669194.1 (g32579.t1) 6.18 40.6 93.9% feature · violin
Cluster 20 20 XP_065655470.1 (g31895.t2) 6.42 39.6 90.5% feature · violin
Cluster 20 21 XP_065669900.1 (g9036.t1) 6.80 39.5 89.5% feature · violin
Cluster 20 22 XP_065646937.1 (g23066.t1) 6.24 38.0 86.6% feature · violin
Cluster 20 23 g5994.t1 not mapped 5.76 37.8 88.5% feature · violin
Cluster 20 24 XP_065670822.1 (g29711.t1|DPH7_HUMAN) 4.60 37.7 91.4% feature · violin
Cluster 20 25 XP_065668707.1 (g10500.t1) 6.95 37.0 83.5% feature · violin
Cluster 20 26 XP_065651323.1 (g5466.t1|CTXA_CARAL) 7.63 36.2 80.6% feature · violin
Cluster 20 27 g11571.t1 not mapped 5.78 35.7 83.2% feature · violin
Cluster 20 28 g10351.t1|DKK3_MOUSE not mapped 6.15 35.7 82.3% feature · violin
Cluster 20 29 XP_065662151.1 (g3411.t1) 5.23 35.7 85.6% feature · violin
Cluster 20 30 XP_065672624.1 (g26968.t1|ERP60_SCHMA) 5.38 35.4 83.7% feature · violin
Cluster 20 31 g21784.t1 not mapped 5.41 35.2 83.7% feature · violin
Cluster 20 32 g6452.t1|CO4A2_ASCSU not mapped 5.09 35.0 83.9% feature · violin
Cluster 20 33 XP_065659755.1 (g5243.t1) 8.68 34.5 76.4% feature · violin
Cluster 20 34 XP_065669759.1 (g4449.t1) 5.96 34.4 78.9% feature · violin
Cluster 20 35 g19773.t1 not mapped 4.81 34.0 82.7% feature · violin
Cluster 20 36 XP_065669110.1 (g18920.t1) 8.39 33.6 74.4% feature · violin
Cluster 20 37 XP_065659361.1 (g19023.t1|FOX1_CAEEL) 8.33 33.5 74.4% feature · violin
Cluster 20 38 XP_065644126.1 (g19291.t1|ACE_RAT) 5.35 33.1 77.7% feature · violin
Cluster 20 39 g13063.t1 not mapped 5.17 33.0 77.9% feature · violin
Cluster 20 40 g24451.t1 not mapped 6.96 32.3 73.1% feature · violin
Cluster 20 41 XP_065650018.1 (g24398.t1|VGLU1_XENLA) 5.03 31.8 75.1% feature · violin
Cluster 20 42 XP_065646338.1 (g2182.t1) 7.55 31.7 70.6% feature · violin
Cluster 20 43 XP_065649943.1 (g19153.t1|TXD12_EPICO) 5.01 31.6 75.2% feature · violin
Cluster 20 44 XP_065676544.1 (g24015.t1|P4HTM_MOUSE) 5.31 31.5 74.3% feature · violin
Cluster 20 45 g5465.t1|CTX1_CHIFL not mapped 7.39 31.5 70.4% feature · violin
Cluster 20 46 XP_065669625.1 (g15375.t1) 4.55 31.1 75.2% feature · violin
Cluster 20 47 XP_065667057.1 (g21258.t1) 6.13 30.9 70.2% feature · violin
Cluster 20 48 XP_065674393.1 (g27426.t2|NAS37_CAEEL) 5.24 30.7 71.4% feature · violin
Cluster 20 49 XP_065654252.1 (g14111.t1|GPX1_HUMAN) 4.95 30.6 72.6% feature · violin
Cluster 20 50 XP_065656527.1 (g13986.t1|SYEP_MOUSE) 3.41 30.5 79.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 16 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP