Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g5402.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 24 1 XP_065662945.1 (g11221.t1|CHIT1_HUMAN) 9.58 41.2 98.8% feature · violin
Cluster 24 2 XP_065644200.1 (g10810.t1|AL14E_HUMAN) 7.98 41.1 99.2% feature · violin
Cluster 24 3 g30764.t1|CEL3B_MOUSE not mapped 9.24 41.1 99.8% feature · violin
Cluster 24 4 XP_065644654.1 (g20117.t1) 9.39 40.8 98.3% feature · violin
Cluster 24 5 XP_065663763.1 (g13535.t1|CHI3_CANAL) 8.92 40.7 98.2% feature · violin
Cluster 24 6 XP_065673564.1 (g22659.t1) 9.12 40.7 98.7% feature · violin
Cluster 24 7 g30300.t1|MCPI_MELCP not mapped 9.11 40.7 98.7% feature · violin
Cluster 24 8 XP_065645121.1 (g16528.t1) 9.35 40.4 96.8% feature · violin
Cluster 24 9 XP_065656488.1 (g20685.t1|PRY1_YEAST) 8.92 40.2 97.7% feature · violin
Cluster 24 10 XP_065653335.1 (g13228.t2|CBPA2_RAT) 8.15 40.1 97.2% feature · violin
Cluster 24 11 g21131.t1 not mapped 8.88 40.1 96.7% feature · violin
Cluster 24 12 g15632.t1|VP302_LYCMC not mapped 6.92 40.1 98.3% feature · violin
Cluster 24 13 g30298.t1|AGRIN_CHICK not mapped 7.40 39.9 99.3% feature · violin
Cluster 24 14 g11220.t1|CHIA_MOUSE not mapped 9.65 39.9 95.5% feature · violin
Cluster 24 15 XP_065651365.1 (g28303.t1|CHI2_TOBAC) 8.81 39.8 96.2% feature · violin
Cluster 24 16 XP_065676856.1 (g69.t1|TLL1_DANRE) 8.70 39.6 95.4% feature · violin
Cluster 24 17 XP_065663764.1 (g1963.t1|GRM8_RAT) 8.40 39.6 95.2% feature · violin
Cluster 24 18 XP_065648127.1 (g33299.t1) 7.98 39.0 97.0% feature · violin
Cluster 24 19 g5402.t1 not mapped 8.94 38.8 93.2% feature · violin
Cluster 24 20 g28301.t1|MRC1_HUMAN not mapped 7.03 38.8 97.3% feature · violin
Cluster 24 21 XP_065671085.1 (g9460.t1|SAP3_HUMAN) 8.11 38.8 94.2% feature · violin
Cluster 24 22 g15015.t1|HE_PARLI not mapped 7.23 38.8 98.2% feature · violin
Cluster 24 23 g5218.t1|COMA_CONMA not mapped 6.92 38.6 94.5% feature · violin
Cluster 24 24 XP_065670502.1 (g13860.t1) 7.07 38.4 94.2% feature · violin
Cluster 24 25 g6008.t1|SPAN_STRPU not mapped 9.28 38.3 91.7% feature · violin
Cluster 24 26 XP_065655907.1 (g29807.t1|BLC_VIBCH) 6.24 38.1 95.0% feature · violin
Cluster 24 27 XP_065655851.1 (g56.t1|MMP27_HUMAN) 9.26 37.9 90.5% feature · violin
Cluster 24 28 XP_065653781.1 (g12038.t1) 7.85 37.4 91.5% feature · violin
Cluster 24 29 g20553.t1|LCE_ORYLA not mapped 7.74 37.4 91.0% feature · violin
Cluster 24 30 XP_065663674.1 (g23353.t1|PRSS8_RAT) 8.38 36.9 89.1% feature · violin
Cluster 24 31 g30304.t1|MCPI_MELCP not mapped 5.16 36.8 96.2% feature · violin
Cluster 24 32 XP_065645688.1 (g30301.t1|RTJK_DROME) 9.18 36.5 87.4% feature · violin
Cluster 24 33 XP_065656131.1 (g26848.t1) 7.58 36.4 91.2% feature · violin
Cluster 24 34 g25722.t1|ACTP1_ANTAS not mapped 7.01 36.2 89.6% feature · violin
Cluster 24 35 g20552.t1|VMP_NEMVE not mapped 7.46 36.1 88.1% feature · violin
Cluster 24 36 g30639.t1|NAS13_CAEEL not mapped 5.38 35.9 92.4% feature · violin
Cluster 24 37 g2978.t1|NAS15_CAEEL not mapped 7.54 35.9 88.6% feature · violin
Cluster 24 38 g7895.t1|CTRC_MOUSE not mapped 6.92 35.3 93.5% feature · violin
Cluster 24 39 XP_065643172.1 (g19249.t1) 6.09 35.1 87.4% feature · violin
Cluster 24 40 XP_065644861.1 (g30297.t1|NPC2_DROME) 7.49 35.1 85.6% feature · violin
Cluster 24 41 XP_065669272.1 (g25078.t1|CBPA4_MOUSE) 6.65 34.3 84.6% feature · violin
Cluster 24 42 g9485.t1 not mapped 6.89 34.3 83.4% feature · violin
Cluster 24 43 g6165.t1|NAS15_CAEEL not mapped 8.34 34.1 81.8% feature · violin
Cluster 24 44 XP_065656619.1 (g10556.t1|HEXC_BOMMO) 6.89 34.0 82.6% feature · violin
Cluster 24 45 XP_065676689.1 (g10737.t1|PLCX1_ARTBC) 7.11 33.7 81.9% feature · violin
Cluster 24 46 XP_065674799.1 (g2789.t1) 5.97 33.5 83.7% feature · violin
Cluster 24 47 XP_065657688.1 (g11406.t1|LIPP_HORSE) 5.96 33.3 82.3% feature · violin
Cluster 24 48 XP_065668835.1 (g6032.t1|NAS13_CAEEL) 7.34 33.3 80.6% feature · violin
Cluster 24 49 g30759.t1|CEL3B_MOUSE not mapped 7.24 33.2 81.8% feature · violin
Cluster 24 50 g3101.t1 not mapped 6.79 32.8 79.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP