Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g5840.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 28 1 g29750.t1|WNT2B_CHICK not mapped 6.93 29.1 92.2% feature · violin
Cluster 28 2 XP_065668040.1 (g13856.t1) 4.66 28.7 97.1% feature · violin
Cluster 28 3 XP_065671145.1 (g15884.t1) 7.36 28.7 91.1% feature · violin
Cluster 28 4 XP_065670426.1 (g30709.t1|GILT_BOVIN) 5.04 28.1 93.4% feature · violin
Cluster 28 5 g31719.t1 not mapped 7.52 27.3 86.2% feature · violin
Cluster 28 6 g4475.t1 not mapped 4.11 26.3 95.7% feature · violin
Cluster 28 7 g29448.t1|MYPH_ECHGR not mapped 3.50 26.1 96.3% feature · violin
Cluster 28 8 g874.t1 not mapped 4.62 25.5 99.1% feature · violin
Cluster 28 9 XP_065670736.1 (g9835.t1|AZIN2_XENLA) 1.83 24.8 99.7% feature · violin
Cluster 28 10 g18808.t1 not mapped 6.75 24.3 77.6% feature · violin
Cluster 28 11 XP_065645093.1 (g13145.t1|VP302_LYCMC) 4.26 23.9 81.9% feature · violin
Cluster 28 12 XP_065647195.1 (g13058.t1|SODC_CAMDR) 4.22 23.9 82.2% feature · violin
Cluster 28 13 XP_065646705.1 (g26427.t1|GRM3_MOUSE) 3.69 23.7 97.4% feature · violin
Cluster 28 14 XP_065656069.1 (g7648.t1) 3.71 23.6 94.0% feature · violin
Cluster 28 15 XP_065671591.1 (g3221.t1|FGRL1_CHICK) 4.40 23.6 80.7% feature · violin
Cluster 28 16 g31922.t1|INX4_DROME not mapped 2.76 23.5 97.1% feature · violin
Cluster 28 17 g7977.t1|MMP24_MOUSE not mapped 3.89 23.2 91.4% feature · violin
Cluster 28 18 g13904.t1 not mapped 3.77 23.2 91.7% feature · violin
Cluster 28 19 g875.t1 not mapped 4.03 22.9 79.3% feature · violin
Cluster 28 20 XP_065649365.1 (g17831.t1|GELS2_LUMTE) 2.33 22.8 98.6% feature · violin
Cluster 28 21 g1992.t1|WNT4_CHICK not mapped 8.61 22.8 71.3% feature · violin
Cluster 28 22 XP_065651805.1 (g24237.t1|CATB_RAT) 2.98 22.6 98.0% feature · violin
Cluster 28 23 XP_065672827.1 (g31626.t1) 4.83 21.9 99.7% feature · violin
Cluster 28 24 g17122.t1 not mapped 5.95 21.8 70.1% feature · violin
Cluster 28 25 g7621.t1|CATL_DROME not mapped 2.46 21.7 97.4% feature · violin
Cluster 28 26 XP_065664264.1 (g15773.t2) 4.68 21.7 73.9% feature · violin
Cluster 28 27 g4335.t1|CATL_DROME not mapped 4.23 21.7 98.3% feature · violin
Cluster 28 28 XP_065674317.1 (g19531.t1) 7.96 21.6 68.7% feature · violin
Cluster 28 29 XP_065665835.1 (g28992.t1|EGL4_CAEEL) 3.40 21.6 81.3% feature · violin
Cluster 28 30 XP_065644368.1 (g25767.t1|FRIH_TREBE) 3.83 21.1 93.7% feature · violin
Cluster 28 31 g17940.t1|MYPH_ECHGR not mapped 3.50 21.0 90.8% feature · violin
Cluster 28 32 g18321.t1 not mapped 3.08 20.9 83.3% feature · violin
Cluster 28 33 XP_065674785.1 (g6754.t1) 3.73 20.8 97.1% feature · violin
Cluster 28 34 XP_065670751.1 (g31685.t1|CFAD_DICDI) 3.05 20.8 94.3% feature · violin
Cluster 28 35 g27119.t1 not mapped 3.56 20.7 92.5% feature · violin
Cluster 28 36 g28064.t1|WNT3_MOUSE not mapped 6.26 20.7 66.1% feature · violin
Cluster 28 37 XP_065669973.1 (g12787.t1|ANX12_HYDVU) 2.28 20.6 96.3% feature · violin
Cluster 28 38 XP_065648858.1 (g12971.t1) 2.87 20.2 83.3% feature · violin
Cluster 28 39 g10950.t1 not mapped 4.17 19.9 69.0% feature · violin
Cluster 28 40 XP_065651485.1 (g27363.t1|ODP2_HUMAN) 2.65 19.7 80.2% feature · violin
Cluster 28 41 XP_065666462.1 (g23901.t1|LAC2_BOTFU) 3.19 19.7 81.9% feature · violin
Cluster 28 42 XP_065668398.1 (g10382.t1) 4.30 19.6 99.7% feature · violin
Cluster 28 43 g5414.t1|CGAS_NEMVE not mapped 3.06 19.5 75.0% feature · violin
Cluster 28 44 XP_065648968.1 (g5840.t1) 3.25 19.2 72.1% feature · violin
Cluster 28 45 XP_065646786.1 (g23100.t1|ASPP_AEDAE) 2.54 19.2 83.0% feature · violin
Cluster 28 46 g23875.t1|TM11B_MOUSE not mapped 6.19 19.0 60.6% feature · violin
Cluster 28 47 XP_065657482.1 (g1591.t1|ROR1_HUMAN) 3.31 18.7 70.1% feature · violin
Cluster 28 48 XP_065652153.1 (g26446.t2|ERGI3_DANRE) 2.33 18.7 89.4% feature · violin
Cluster 28 49 g11352.t1|CO4A1_DROME not mapped 3.03 18.6 75.6% feature · violin
Cluster 28 50 XP_065670235.1 (g31213.t1|EAA2_RAT) 3.68 18.6 66.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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