Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g7895.t1|CTRC_MOUSE is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 g25079.t1 not mapped 11.14 41.3 100.0% feature · violin
Cluster 16 2 XP_065669270.1 (g25080.t1) 11.44 41.2 100.0% feature · violin
Cluster 16 3 g6139.t1|TSP2_MOUSE not mapped 9.76 41.0 98.8% feature · violin
Cluster 16 4 XP_065656185.1 (g7641.t1|TRAIP_MOUSE) 7.92 40.6 98.7% feature · violin
Cluster 16 5 XP_065651650.1 (g18331.t1) 9.71 40.5 98.0% feature · violin
Cluster 16 6 g3219.t1|COMA_CONMA not mapped 8.44 40.4 97.8% feature · violin
Cluster 16 7 XP_065663813.1 (g20832.t1|DMBT1_RABIT) 9.30 39.4 94.9% feature · violin
Cluster 16 8 XP_065674495.1 (g27455.t1|PLC_STAAE) 9.16 39.3 94.9% feature · violin
Cluster 16 9 g3220.t1|COMA_CONMA not mapped 6.55 38.5 97.1% feature · violin
Cluster 16 10 g28301.t1|MRC1_HUMAN not mapped 7.20 38.4 96.3% feature · violin
Cluster 16 11 XP_065656253.1 (g4308.t2|KALRN_MOUSE) 5.39 37.5 93.9% feature · violin
Cluster 16 12 XP_065666742.1 (g30334.t1|MUC5A_HUMAN) 7.42 37.3 91.8% feature · violin
Cluster 16 13 XP_065667755.1 (g5988.t1|AMID_ECOLI) 6.48 37.0 91.4% feature · violin
Cluster 16 14 g3976.t1 not mapped 5.60 36.7 92.1% feature · violin
Cluster 16 15 XP_065646333.1 (g2192.t1|LMX1A_HUMAN) 6.17 34.5 85.4% feature · violin
Cluster 16 16 g7895.t1|CTRC_MOUSE not mapped 5.98 33.2 91.9% feature · violin
Cluster 16 17 XP_065666608.1 (g28304.t1|LOX5_HUMAN) 9.00 33.1 79.8% feature · violin
Cluster 16 18 XP_065653767.1 (g26093.t1|HMCN1_HUMAN) 7.65 32.8 79.6% feature · violin
Cluster 16 19 g15015.t1|HE_PARLI not mapped 5.67 32.4 88.6% feature · violin
Cluster 16 20 XP_065655005.1 (g10778.t1|MUC5B_HUMAN) 5.63 32.0 80.5% feature · violin
Cluster 16 21 XP_065652500.1 (g22063.t1|ATS6_HUMAN) 7.45 31.5 76.6% feature · violin
Cluster 16 22 g16562.t1 not mapped 5.99 31.2 77.8% feature · violin
Cluster 16 23 XP_065657087.1 (g6146.t1|VWA7_BOVIN) 8.36 31.0 74.9% feature · violin
Cluster 16 24 XP_065674738.1 (g6182.t1) 7.06 31.0 75.9% feature · violin
Cluster 16 25 XP_065655877.1 (g15139.t1|ENPP4_MOUSE) 7.12 30.2 73.6% feature · violin
Cluster 16 26 XP_065672961.1 (g30584.t1|KSR2_MOUSE) 4.94 29.3 75.9% feature · violin
Cluster 16 27 g32519.t1 not mapped 3.77 28.4 81.3% feature · violin
Cluster 16 28 XP_065664094.1 (g17778.t1) 6.21 26.3 64.8% feature · violin
Cluster 16 29 XP_065670502.1 (g13860.t1) 4.29 25.4 69.0% feature · violin
Cluster 16 30 g5524.t1 not mapped 7.13 25.3 61.6% feature · violin
Cluster 16 31 g4301.t1|NDF1_XENLA not mapped 6.24 25.3 62.1% feature · violin
Cluster 16 32 XP_065667216.1 (g15981.t1|DPM3_BOVIN) 3.14 24.9 73.1% feature · violin
Cluster 16 33 XP_065643909.1 (g19859.t1|MPU1_MOUSE) 3.18 24.9 73.1% feature · violin
Cluster 16 34 XP_065661695.1 (g32186.t1|LOX5_HUMAN) 6.14 24.8 61.3% feature · violin
Cluster 16 35 g15632.t1|VP302_LYCMC not mapped 3.19 24.4 74.4% feature · violin
Cluster 16 36 XP_065649990.1 (g17998.t1|CRYAB_BOVIN) 1.86 24.0 95.3% feature · violin
Cluster 16 37 g19443.t1|MYPH_ECHGR not mapped 3.15 23.6 70.7% feature · violin
Cluster 16 38 XP_065647818.1 (g19401.t1|NUCB2_RAT) 1.79 23.3 86.2% feature · violin
Cluster 16 39 XP_065644861.1 (g30297.t1|NPC2_DROME) 4.29 23.3 61.6% feature · violin
Cluster 16 40 XP_065675260.1 (g20559.t1|MGT4A_XENTR) 7.12 23.2 56.4% feature · violin
Cluster 16 41 g22665.t1|PRSS8_RAT not mapped 5.04 22.9 58.8% feature · violin
Cluster 16 42 XP_065643172.1 (g19249.t1) 4.33 22.9 60.6% feature · violin
Cluster 16 43 XP_065652177.1 (g2490.t1|NDF4_HUMAN) 5.42 22.5 56.2% feature · violin
Cluster 16 44 XP_065647024.1 (g28175.t1|TAP26_HUMAN) 2.83 22.3 68.4% feature · violin
Cluster 16 45 XP_065648125.1 (g25771.t1|ANTA_HYDVU) 4.65 22.3 59.8% feature · violin
Cluster 16 46 g6145.t1|ATS14_HUMAN not mapped 7.74 22.2 53.7% feature · violin
Cluster 16 47 XP_065671086.1 (g25884.t1|NEC1_RAT) 3.69 22.2 62.1% feature · violin
Cluster 16 48 XP_065646514.1 (g12086.t1) 4.78 22.2 56.7% feature · violin
Cluster 16 49 g19133.t1|COCA1_HUMAN not mapped 4.97 22.1 56.4% feature · violin
Cluster 16 50 g8190.t1 not mapped 6.95 21.8 52.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 18 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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