Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g8637.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 26 1 g20995.t1|GST_NOTSL not mapped 6.36 52.2 99.9% feature · violin
Cluster 26 2 g234.t1|CALM_SCHPO not mapped 6.46 51.6 98.2% feature · violin
Cluster 26 3 g21993.t1|MYS_ARGIR not mapped 5.32 49.9 98.2% feature · violin
Cluster 26 4 XP_065659687.1 (g21994.t1|MYS_ARGIR) 5.26 49.9 97.8% feature · violin
Cluster 26 5 XP_065648392.1 (g13929.t1|5NTC_PONAB) 4.90 49.9 98.9% feature · violin
Cluster 26 6 XP_065655917.1 (g29791.t1|TITIN_DROME) 4.71 48.4 98.5% feature · violin
Cluster 26 7 XP_065643740.1 (g13693.t1) 6.67 47.8 91.3% feature · violin
Cluster 26 8 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 4.16 47.7 98.6% feature · violin
Cluster 26 9 XP_065656952.1 (g26642.t1|FBN2_MOUSE) 5.01 47.6 94.5% feature · violin
Cluster 26 10 g21995.t1|MYS_PODCA not mapped 5.09 47.6 94.8% feature · violin
Cluster 26 11 XP_065655628.1 (g1302.t1) 4.85 47.5 95.2% feature · violin
Cluster 26 12 XP_065645034.1 (g15636.t1|FRIS_LYMST) 2.90 47.0 100.0% feature · violin
Cluster 26 13 XP_065656885.1 (g5179.t1) 4.45 46.7 97.8% feature · violin
Cluster 26 14 g21873.t1|FRIS_LYMST not mapped 4.43 46.6 99.5% feature · violin
Cluster 26 15 XP_065661376.1 (g30822.t1|FBN1_MOUSE) 4.66 46.3 93.9% feature · violin
Cluster 26 16 XP_065663892.1 (g14541.t1|MVP_STRPU) 2.86 46.2 99.1% feature · violin
Cluster 26 17 XP_065663860.1 (g14519.t1) 5.35 45.8 89.6% feature · violin
Cluster 26 18 g9762.t1 not mapped 8.10 45.8 86.5% feature · violin
Cluster 26 19 XP_065644805.1 (g24070.t1|TMOD1_RAT) 6.20 45.7 88.7% feature · violin
Cluster 26 20 g14344.t1|SCRY4_ENTDO not mapped 9.04 45.1 85.0% feature · violin
Cluster 26 21 XP_065644365.1 (g25762.t1|A4_CAEEL) 3.33 45.1 98.9% feature · violin
Cluster 26 22 XP_065651427.1 (g8637.t1) 4.61 44.8 90.5% feature · violin
Cluster 26 23 g17994.t1|TBA_XENLA not mapped 4.25 44.6 95.9% feature · violin
Cluster 26 24 XP_065657745.1 (g18565.t1|Y284L_PBCV1) 4.32 43.7 91.1% feature · violin
Cluster 26 25 XP_065670194.1 (g31235.t1|TPM1_PODCA) 2.99 43.6 99.3% feature · violin
Cluster 26 26 XP_065659576.1 (g8328.t1|RADIL_DANRE) 3.96 43.1 89.4% feature · violin
Cluster 26 27 g7621.t1|CATL_DROME not mapped 3.02 43.1 98.5% feature · violin
Cluster 26 28 XP_065656939.1 (g19664.t1) 4.13 42.6 91.3% feature · violin
Cluster 26 29 XP_065663286.1 (g21825.t1) 4.18 42.4 88.4% feature · violin
Cluster 26 30 XP_065646936.1 (g23065.t1|KAD5_BOVIN) 4.28 42.0 87.1% feature · violin
Cluster 26 31 XP_065663208.1 (g11696.t1|TPM1_HYDVU) 5.23 42.0 83.8% feature · violin
Cluster 26 32 XP_065649792.1 (g2700.t1|AT1A_HYDVU) 4.25 41.9 86.0% feature · violin
Cluster 26 33 XP_065655691.1 (g33430.t1|MRLCA_RAT) 2.22 41.6 99.2% feature · violin
Cluster 26 34 XP_065674333.1 (g22643.t1|DD3_DICDI) 8.19 41.6 78.5% feature · violin
Cluster 26 35 XP_065673651.1 (g24851.t1|DD3_DICDI) 6.17 41.5 80.3% feature · violin
Cluster 26 36 XP_065653822.1 (g20399.t1|CO4A1_HUMAN) 6.04 41.4 80.1% feature · violin
Cluster 26 37 XP_065670466.1 (g3002.t1|DHE3_RAT) 2.19 41.1 98.6% feature · violin
Cluster 26 38 XP_065664518.1 (g1279.t1) 5.10 41.0 81.1% feature · violin
Cluster 26 39 XP_065659959.1 (g31590.t1|MYSU_RABIT) 3.96 40.9 86.3% feature · violin
Cluster 26 40 g12471.t1 not mapped 3.95 40.5 86.8% feature · violin
Cluster 26 41 XP_065652007.1 (g24496.t1|FAT2_DROME) 8.09 40.4 76.3% feature · violin
Cluster 26 42 g14345.t2|GST_NOTSL not mapped 8.80 40.3 76.0% feature · violin
Cluster 26 43 XP_065655534.1 (g7828.t1|CD63_HUMAN) 2.40 40.2 96.3% feature · violin
Cluster 26 44 g25302.t1|NID2_MOUSE not mapped 4.44 40.0 81.9% feature · violin
Cluster 26 45 XP_065666259.1 (g3763.t1|DD3_DICDI) 7.33 40.0 76.1% feature · violin
Cluster 26 46 XP_065655619.1 (g4809.t1) 3.88 40.0 85.5% feature · violin
Cluster 26 47 XP_065673130.1 (g3156.t1|UBE2H_MOUSE) 3.77 40.0 85.5% feature · violin
Cluster 26 48 XP_065649057.1 (g24605.t1|DEN6A_CHICK) 2.92 39.7 89.7% feature · violin
Cluster 26 49 XP_065648797.1 (g26886.t1|RPGR_MOUSE) 2.46 39.7 97.4% feature · violin
Cluster 26 50 g26833.t1|SLIT_DROME not mapped 3.60 39.5 86.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 13 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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