Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that g9973.t1 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 34 1 g9973.t1 not mapped 9.32 19.1 99.2% feature · violin
Cluster 34 2 g25037.t1 not mapped 12.66 18.8 97.6% feature · violin
Cluster 34 3 XP_065665119.1 (g15495.t1) 9.15 18.7 97.6% feature · violin
Cluster 34 4 g25038.t1 not mapped 12.23 18.7 96.8% feature · violin
Cluster 34 5 g7649.t1|MLP_ACRMI not mapped 9.32 18.4 96.0% feature · violin
Cluster 34 6 g30415.t1|COCA1_CHICK not mapped 8.45 17.7 92.8% feature · violin
Cluster 34 7 XP_065648125.1 (g25771.t1|ANTA_HYDVU) 6.77 16.9 92.8% feature · violin
Cluster 34 8 g9219.t1 not mapped 11.25 16.8 87.2% feature · violin
Cluster 34 9 g30298.t1|AGRIN_CHICK not mapped 5.90 16.4 95.2% feature · violin
Cluster 34 10 XP_065654027.1 (g9515.t1|VA5_VESMG) 8.36 16.2 85.6% feature · violin
Cluster 34 11 g29094.t1 not mapped 7.82 16.1 84.8% feature · violin
Cluster 34 12 g622.t1 not mapped 7.11 16.0 84.8% feature · violin
Cluster 34 13 XP_065648126.1 (g25773.t1|ANTA_HYDVU) 6.33 15.8 87.2% feature · violin
Cluster 34 14 g3220.t1|COMA_CONMA not mapped 5.35 15.7 91.2% feature · violin
Cluster 34 15 XP_065657270.1 (g33504.t1|PI4KA_BOVIN) 5.39 15.5 85.6% feature · violin
Cluster 34 16 g33794.t1|MYPH_ECHGR not mapped 3.70 15.5 90.4% feature · violin
Cluster 34 17 XP_065666742.1 (g30334.t1|MUC5A_HUMAN) 5.81 14.8 82.4% feature · violin
Cluster 34 18 XP_065648127.1 (g33299.t1) 5.21 14.7 87.2% feature · violin
Cluster 34 19 XP_065650692.1 (g30416.t1|COCA1_MOUSE) 7.89 14.2 74.4% feature · violin
Cluster 34 20 XP_065657273.1 (g33500.t1|PRY1_YEAST) 5.25 14.0 77.6% feature · violin
Cluster 34 21 g7643.t1|ECT_ACRMI not mapped 10.25 13.5 70.4% feature · violin
Cluster 34 22 g6139.t1|TSP2_MOUSE not mapped 6.29 13.4 73.6% feature · violin
Cluster 34 23 XP_065654033.1 (g24537.t1|SSPO_CHICK) 9.60 13.2 68.8% feature · violin
Cluster 34 24 XP_065673406.1 (g12478.t1|GAPR1_MOUSE) 7.01 12.9 68.0% feature · violin
Cluster 34 25 XP_065662949.1 (g24939.t1|INS1B_DANRE) 5.68 12.8 69.6% feature · violin
Cluster 34 26 XP_065676074.1 (g6120.t1|KIF28_MOUSE) 4.52 12.8 72.8% feature · violin
Cluster 34 27 XP_065675126.1 (g1821.t1) 4.98 12.6 69.6% feature · violin
Cluster 34 28 XP_065676855.1 (g16639.t1|DUS15_MOUSE) 5.70 12.4 68.0% feature · violin
Cluster 34 29 XP_065661733.1 (g32225.t1|CTRB1_HUMAN) 10.19 12.3 64.0% feature · violin
Cluster 34 30 g18539.t1|ATS7_MOUSE not mapped 7.98 12.2 64.0% feature · violin
Cluster 34 31 g6228.t1|NAS6_CAEEL not mapped 6.02 12.0 66.4% feature · violin
Cluster 34 32 XP_065663083.1 (g25494.t1|GGT1_PIG) 3.92 12.0 71.2% feature · violin
Cluster 34 33 g30764.t1|CEL3B_MOUSE not mapped 3.98 11.9 74.4% feature · violin
Cluster 34 34 XP_065675062.1 (g1644.t1|NTPES_BACSU) 4.58 11.8 67.2% feature · violin
Cluster 34 35 XP_065657371.1 (g31007.t1) 6.49 11.6 61.6% feature · violin
Cluster 34 36 g32519.t1 not mapped 3.37 11.6 75.2% feature · violin
Cluster 34 37 g7895.t1|CTRC_MOUSE not mapped 3.59 11.4 80.8% feature · violin
Cluster 34 38 XP_065646391.1 (g33212.t1|TSN11_MOUSE) 2.65 10.8 80.8% feature · violin
Cluster 34 39 XP_065656156.1 (g18531.t1) 5.03 10.8 60.0% feature · violin
Cluster 34 40 XP_065660957.1 (g13437.t1) 5.07 10.6 58.4% feature · violin
Cluster 34 41 XP_065661842.1 (g27534.t1) 5.57 10.2 55.2% feature · violin
Cluster 34 42 XP_065671020.1 (g31632.t1|HES1B_XENLA) 3.75 10.1 61.6% feature · violin
Cluster 34 43 g30304.t1|MCPI_MELCP not mapped 2.95 10.1 73.6% feature · violin
Cluster 34 44 g15015.t1|HE_PARLI not mapped 3.28 9.9 69.6% feature · violin
Cluster 34 45 XP_065665835.1 (g28992.t1|EGL4_CAEEL) 3.16 9.7 63.2% feature · violin
Cluster 34 46 XP_065646264.1 (g24360.t1|CALUB_DANRE) 1.83 9.4 74.4% feature · violin
Cluster 34 47 g24540.t1|CADN_ACRMI not mapped 10.30 9.4 48.8% feature · violin
Cluster 34 48 g17122.t1 not mapped 5.12 9.4 51.2% feature · violin
Cluster 34 49 g12999.t1|CALM_METSE not mapped 0.86 9.3 93.6% feature · violin
Cluster 34 50 XP_065655824.1 (g20428.t1|VMO1_CHICK) 4.84 7.7 42.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Hydra vulgaris, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 23 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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