Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.10277 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 21 1 NV2.3425 not mapped 11.41 13.4 100.0% feature · violin
Cluster 21 2 NV2.21610 not mapped 12.19 13.2 98.4% feature · violin
Cluster 21 3 XP_032236645.1 (NV2.6785) 10.59 12.7 95.2% feature · violin
Cluster 21 4 XP_048579463.1 (NV2.12902) 11.25 11.8 88.7% feature · violin
Cluster 21 5 XP_032242610.1 (NV2.11564) 10.24 11.8 88.7% feature · violin
Cluster 21 6 NV2.12904 not mapped 9.95 10.9 82.3% feature · violin
Cluster 21 7 NV2.10277 not mapped 2.24 10.2 98.4% feature · violin
Cluster 21 8 NV2.7431 not mapped 9.02 10.1 75.8% feature · violin
Cluster 21 9 XP_032238357.2 (NV2.20203) 1.88 10.0 100.0% feature · violin
Cluster 21 10 XP_048587058.1 (NV2.25146) 8.56 9.6 72.6% feature · violin
Cluster 21 11 XP_032229634.2 (NV2.22761) 4.49 9.6 100.0% feature · violin
Cluster 21 12 NV2.22820 not mapped 10.55 9.0 67.7% feature · violin
Cluster 21 13 XP_032239673.2 (NV2.14988) 9.28 9.0 67.7% feature · violin
Cluster 21 14 XP_001641534.3 (NV2.12087) 3.98 9.0 100.0% feature · violin
Cluster 21 15 NV2.12903 not mapped 9.25 8.8 66.1% feature · violin
Cluster 21 16 XP_001626294.2 (NV2.6419) 1.61 8.7 100.0% feature · violin
Cluster 21 17 XP_001636593.2 (NV2.16121) 3.65 8.6 95.2% feature · violin
Cluster 21 18 XP_048580691.1 (NV2.13525) 11.27 8.2 61.3% feature · violin
Cluster 21 19 NV2.770 not mapped 8.88 8.1 61.3% feature · violin
Cluster 21 20 XP_048585616.1 (NV2.17740) 4.30 8.1 67.7% feature · violin
Cluster 21 21 NV2.23463 not mapped 2.53 8.1 93.5% feature · violin
Cluster 21 22 NV2.18292 not mapped 6.61 8.0 61.3% feature · violin
Cluster 21 23 NV2.1249 not mapped 2.18 8.0 93.5% feature · violin
Cluster 21 24 XP_048586062.1 (NV2.20054) 2.68 7.9 98.4% feature · violin
Cluster 21 25 XP_032234772.1 (NV2.10185) 3.94 7.9 67.7% feature · violin
Cluster 21 26 NV2.15977 not mapped 1.74 7.7 88.7% feature · violin
Cluster 21 27 XP_048581323.1 (NV2.14699) 9.48 7.3 54.8% feature · violin
Cluster 21 28 XP_001636296.1 (NV2.25450) 1.91 7.2 85.5% feature · violin
Cluster 21 29 NV2.13562 not mapped 3.42 7.2 66.1% feature · violin
Cluster 21 30 XP_001629285.1 (NV2.23520) 2.14 7.2 85.5% feature · violin
Cluster 21 31 XP_032231412.1 (NV2.4812) 2.76 7.1 75.8% feature · violin
Cluster 21 32 XP_001640689.1 (NV2.20404) 1.83 7.1 98.4% feature · violin
Cluster 21 33 XP_001641240.2 (NV2.18064) 3.46 7.0 62.9% feature · violin
Cluster 21 34 XP_001634593.1 (NV2.1870) 3.45 7.0 62.9% feature · violin
Cluster 21 35 XP_032237946.2 (NV2.13531) 1.58 6.9 93.5% feature · violin
Cluster 21 36 XP_001637624.1 (NV2.23347) 2.95 6.8 67.7% feature · violin
Cluster 21 37 XP_048586246.1 (NV2.19585) 3.56 6.7 61.3% feature · violin
Cluster 21 38 NV2.5899 not mapped 1.42 6.7 95.2% feature · violin
Cluster 21 39 XP_048588540.1 (NV2.21473) 8.30 6.7 50.0% feature · violin
Cluster 21 40 NV2.800 not mapped 8.03 6.6 50.0% feature · violin
Cluster 21 41 XP_001635775.2 (NV2.9784) 1.86 6.6 83.9% feature · violin
Cluster 21 42 NV2.5209 not mapped 4.47 6.4 51.6% feature · violin
Cluster 21 43 XP_001641799.2 (NV2.3298) 2.53 6.2 69.4% feature · violin
Cluster 21 44 XP_001639622.1 (NV2.16462) 2.38 6.0 66.1% feature · violin
Cluster 21 45 XP_048576805.1 (NV2.4658) 6.61 5.9 45.2% feature · violin
Cluster 21 46 XP_001636562.2 (NV2.3804) 1.97 5.9 71.0% feature · violin
Cluster 21 47 XP_048581053.1 (NV2.15071) 2.23 5.9 67.7% feature · violin
Cluster 21 48 NV2.12028 not mapped 1.36 5.9 87.1% feature · violin
Cluster 21 49 NV2.3190 not mapped 2.00 5.9 72.6% feature · violin
Cluster 21 50 XP_048582062.1 (NV2.16637) 4.78 5.8 46.8% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 18 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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