Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.10880 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 XP_001622874.2 (NV2.19607) 3.08 11.6 100.0% feature · violin
Cluster 13 2 XP_001630583.1 (NV2.7661) 3.70 11.2 98.7% feature · violin
Cluster 13 3 XP_048589884.1 (NV2.5973) 3.40 10.8 93.5% feature · violin
Cluster 13 4 NV2.6264 not mapped 3.07 10.2 100.0% feature · violin
Cluster 13 5 NV2.19682 not mapped 3.07 9.2 98.7% feature · violin
Cluster 13 6 XP_001639483.2 (NV2.16581) 5.81 9.2 64.9% feature · violin
Cluster 13 7 XP_001628652.2 (NV2.5353) 3.32 9.2 79.2% feature · violin
Cluster 13 8 XP_001638232.1 (NV2.10670) 7.42 9.1 62.3% feature · violin
Cluster 13 9 NV2.156 not mapped 5.53 8.9 63.6% feature · violin
Cluster 13 10 XP_001641336.2 (NV2.17964) 3.78 8.8 76.6% feature · violin
Cluster 13 11 XP_001628178.2 (NV2.17049) 3.80 8.8 70.1% feature · violin
Cluster 13 12 XP_032234748.2 (NV2.10172) 3.69 8.7 72.7% feature · violin
Cluster 13 13 NV2.3734 not mapped 3.26 8.6 84.4% feature · violin
Cluster 13 14 NV2.23896 not mapped 3.15 8.4 76.6% feature · violin
Cluster 13 15 XP_001624357.2 (NV2.19701) 3.14 8.3 89.6% feature · violin
Cluster 13 16 XP_032234276.2 (NV2.22684) 3.31 8.0 72.7% feature · violin
Cluster 13 17 XP_048577854.1 (NV2.8804) 2.97 7.9 74.0% feature · violin
Cluster 13 18 XP_001628790.1 (NV2.4249) 4.04 7.9 61.0% feature · violin
Cluster 13 19 XP_032240357.2 (NV2.10880) 1.20 7.9 94.8% feature · violin
Cluster 13 20 XP_032239644.2 (NV2.23229) 3.33 7.8 66.2% feature · violin
Cluster 13 21 NV2.2881 not mapped 1.87 7.6 88.3% feature · violin
Cluster 13 22 NV2.14515 not mapped 2.49 7.6 81.8% feature · violin
Cluster 13 23 XP_001623639.1 (NV2.5541) 1.18 7.5 98.7% feature · violin
Cluster 13 24 XP_032238394.2 (NV2.20278) 2.93 7.5 72.7% feature · violin
Cluster 13 25 XP_001630069.1 (NV2.8119) 2.86 7.5 79.2% feature · violin
Cluster 13 26 XP_001640452.1 (NV2.7107) 1.02 7.4 96.1% feature · violin
Cluster 13 27 XP_001639919.2 (NV2.14367) 2.96 7.1 67.5% feature · violin
Cluster 13 28 XP_032239646.2 (NV2.23230) 2.98 6.8 62.3% feature · violin
Cluster 13 29 XP_001627114.1 (NV2.7750) 3.77 6.7 51.9% feature · violin
Cluster 13 30 XP_001635381.1 (NV2.25016) 1.37 6.5 89.6% feature · violin
Cluster 13 31 NV2.25347 not mapped 3.80 6.4 49.4% feature · violin
Cluster 13 32 XP_001629056.1 (NV2.7369) 2.48 6.4 63.6% feature · violin
Cluster 13 33 XP_048579093.1 (NV2.10549) 3.37 6.3 51.9% feature · violin
Cluster 13 34 XP_001626334.2 (NV2.17520) 3.36 6.3 51.9% feature · violin
Cluster 13 35 XP_032232506.2 (NV2.19645) 4.93 6.3 45.5% feature · violin
Cluster 13 36 XP_001636510.1 (NV2.3834) 3.35 6.3 51.9% feature · violin
Cluster 13 37 NV2.19319 not mapped 2.67 6.2 58.4% feature · violin
Cluster 13 38 XP_048575989.1 (NV2.7368) 3.77 6.2 48.1% feature · violin
Cluster 13 39 XP_001636422.1 (NV2.54) 2.18 6.2 68.8% feature · violin
Cluster 13 40 XP_032238357.2 (NV2.20203) 0.86 6.1 97.4% feature · violin
Cluster 13 41 NV2.11038 not mapped 0.85 6.1 100.0% feature · violin
Cluster 13 42 NV2.12403 not mapped 3.12 6.0 50.6% feature · violin
Cluster 13 43 XP_032221774.2 (NV2.20475) 2.33 6.0 74.0% feature · violin
Cluster 13 44 XP_048589569.1 (NV2.3632) 2.79 5.9 54.5% feature · violin
Cluster 13 45 XP_001639268.1 (NV2.25109) 2.17 5.9 62.3% feature · violin
Cluster 13 46 NV2.14456 not mapped 3.45 5.9 46.8% feature · violin
Cluster 13 47 NV2.17963 not mapped 3.26 5.8 48.1% feature · violin
Cluster 13 48 XP_048587554.1 (NV2.25349) 3.50 5.8 45.5% feature · violin
Cluster 13 49 XP_001624802.2 (NV2.22728) 0.89 5.7 97.4% feature · violin
Cluster 13 50 XP_001640190.3 (NV2.914) 2.98 5.7 48.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 13 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP