Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.11122 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 18 1 NV2.1189 not mapped 3.67 11.6 90.9% feature · violin
Cluster 18 2 XP_032239984.1 (NV2.7354) 2.74 10.3 89.9% feature · violin
Cluster 18 3 XP_032232817.1 (NV2.4239) 2.91 10.2 88.9% feature · violin
Cluster 18 4 XP_001630812.2 (NV2.9087) 1.40 9.8 98.0% feature · violin
Cluster 18 5 XP_032237044.1 (NV2.5735) 1.33 9.7 99.0% feature · violin
Cluster 18 6 XP_001625867.1 (NV2.6537) 3.27 9.6 79.8% feature · violin
Cluster 18 7 NV2.24326 not mapped 1.20 9.6 99.0% feature · violin
Cluster 18 8 XP_001628718.1 (NV2.6333) 1.54 9.6 97.0% feature · violin
Cluster 18 9 XP_001626060.1 (NV2.11122) 1.33 9.6 100.0% feature · violin
Cluster 18 10 XP_032238841.1 (NV2.4381) 2.93 9.6 76.8% feature · violin
Cluster 18 11 XP_001624649.1 (NV2.9355) 1.40 9.5 100.0% feature · violin
Cluster 18 12 XP_001639308.1 (NV2.25210) 1.43 9.3 99.0% feature · violin
Cluster 18 13 XP_001629584.1 (NV2.15226) 1.28 9.1 100.0% feature · violin
Cluster 18 14 XP_001639566.1 (NV2.16602) 1.31 9.1 99.0% feature · violin
Cluster 18 15 NV2.3291 not mapped 1.40 9.0 98.0% feature · violin
Cluster 18 16 NV2.24796 not mapped 2.59 9.0 76.8% feature · violin
Cluster 18 17 XP_001633436.1 (NV2.17007) 1.36 8.9 99.0% feature · violin
Cluster 18 18 XP_001632549.1 (NV2.3883) 1.29 8.9 100.0% feature · violin
Cluster 18 19 XP_048575640.1 (NV2.7636) 1.38 8.8 97.0% feature · violin
Cluster 18 20 XP_001639879.2 (NV2.14469) 1.28 8.8 99.0% feature · violin
Cluster 18 21 XP_032242836.1 (NV2.13111) 1.19 8.8 99.0% feature · violin
Cluster 18 22 NV2.25317 not mapped 3.53 8.7 61.6% feature · violin
Cluster 18 23 XP_001636454.1 (NV2.132) 1.30 8.7 99.0% feature · violin
Cluster 18 24 XP_001641170.1 (NV2.17856) 1.23 8.5 100.0% feature · violin
Cluster 18 25 XP_001640445.1 (NV2.7080) 1.10 8.5 97.0% feature · violin
Cluster 18 26 NV2.11038 not mapped 0.94 8.4 99.0% feature · violin
Cluster 18 27 XP_032239366.1 (NV2.13311) 1.08 8.4 99.0% feature · violin
Cluster 18 28 XP_001622696.2 (NV2.5947) 1.10 8.4 99.0% feature · violin
Cluster 18 29 NV2.23370 not mapped 1.12 8.3 99.0% feature · violin
Cluster 18 30 XP_001623105.1 (NV2.14258) 1.32 8.3 96.0% feature · violin
Cluster 18 31 XP_001625396.1 (NV2.24797) 2.04 8.3 91.9% feature · violin
Cluster 18 32 NV2.15684 not mapped 1.23 8.3 100.0% feature · violin
Cluster 18 33 XP_001625568.1 (NV2.7821) 1.03 8.3 100.0% feature · violin
Cluster 18 34 XP_001639659.2 (NV2.18467) 1.19 8.2 99.0% feature · violin
Cluster 18 35 NV2.24670 not mapped 2.20 8.2 76.8% feature · violin
Cluster 18 36 XP_001622225.1 (NV2.6672) 1.09 8.2 99.0% feature · violin
Cluster 18 37 XP_032238944.1 (NV2.3196) 1.14 8.2 99.0% feature · violin
Cluster 18 38 XP_001630296.1 (NV2.196) 1.12 8.2 98.0% feature · violin
Cluster 18 39 XP_048576591.1 (NV2.4360) 1.00 8.1 96.0% feature · violin
Cluster 18 40 XP_001642047.1 (NV2.14792) 1.08 8.0 97.0% feature · violin
Cluster 18 41 XP_032220058.1 (NV2.25180) 1.04 8.0 99.0% feature · violin
Cluster 18 42 XP_048575949.1 (NV2.7117) 2.30 7.9 68.7% feature · violin
Cluster 18 43 XP_001633026.1 (NV2.21707) 1.07 7.9 100.0% feature · violin
Cluster 18 44 XP_001628902.1 (NV2.7706) 3.00 7.9 57.6% feature · violin
Cluster 18 45 NV2.4072 not mapped 3.25 7.9 60.6% feature · violin
Cluster 18 46 XP_048584521.1 (NV2.18567) 0.99 7.9 99.0% feature · violin
Cluster 18 47 XP_001626706.1 (NV2.23687) 1.10 7.8 99.0% feature · violin
Cluster 18 48 XP_001633847.1 (NV2.3097) 0.98 7.8 99.0% feature · violin
Cluster 18 49 XP_001638335.1 (NV2.6199) 1.21 7.7 99.0% feature · violin
Cluster 18 50 NV2.11975 not mapped 1.24 7.7 98.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 11 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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