Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 5163 Cluster 7162 Cluster 1145 Cluster 0134 Cluster 14130 Cluster 16117 Cluster 1899 Cluster 1377 Cluster 466 Cluster 1064 Cluster 2162 Cluster 354 Cluster 845 Cluster 1745 Cluster 942 Cluster 1541 Cluster 1137 Cluster 2232 Cluster 229 Cluster 1921 Cluster 619 Cluster 1219 Cluster 2011
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.12261 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 3 1 NV2.17681 11.55 12.5 100.0% feature · violin
Cluster 3 2 NV2.8895 11.85 12.5 100.0% feature · violin
Cluster 3 3 NV2.5271 11.65 12.5 100.0% feature · violin
Cluster 3 4 NV2.8119 8.97 12.5 100.0% feature · violin
Cluster 3 5 NV2.8024 8.35 12.4 100.0% feature · violin
Cluster 3 6 NV2.17732 6.30 12.4 100.0% feature · violin
Cluster 3 7 NV2.8828 10.26 12.3 98.1% feature · violin
Cluster 3 8 NV2.19894 7.97 12.2 98.1% feature · violin
Cluster 3 9 NV2.23535 5.83 12.1 100.0% feature · violin
Cluster 3 10 NV2.17940 9.14 12.0 96.3% feature · violin
Cluster 3 11 NV2.19114 7.70 11.9 96.3% feature · violin
Cluster 3 12 NV2.18989 5.87 11.7 100.0% feature · violin
Cluster 3 13 NV2.6403 5.79 11.7 96.3% feature · violin
Cluster 3 14 NV2.12261 6.91 11.6 94.4% feature · violin
Cluster 3 15 NV2.19896 8.73 11.5 92.6% feature · violin
Cluster 3 16 NV2.9092 6.87 11.4 92.6% feature · violin
Cluster 3 17 NV2.24446 7.94 11.2 90.7% feature · violin
Cluster 3 18 NV2.699 5.08 11.2 94.4% feature · violin
Cluster 3 19 NV2.11447 6.10 11.1 94.4% feature · violin
Cluster 3 20 NV2.6558 5.37 11.0 92.6% feature · violin
Cluster 3 21 NV2.11505 10.52 10.9 87.0% feature · violin
Cluster 3 22 NV2.388 6.52 10.8 88.9% feature · violin
Cluster 3 23 NV2.20097 6.48 10.6 87.0% feature · violin
Cluster 3 24 NV2.19973 6.03 10.2 85.2% feature · violin
Cluster 3 25 NV2.21284 5.35 10.1 87.0% feature · violin
Cluster 3 26 NV2.2044 4.92 10.1 88.9% feature · violin
Cluster 3 27 NV2.12266 7.00 9.8 79.6% feature · violin
Cluster 3 28 NV2.12264 8.50 9.4 75.9% feature · violin
Cluster 3 29 NV2.5900 11.46 9.3 74.1% feature · violin
Cluster 3 30 NV2.13531 2.35 9.2 98.1% feature · violin
Cluster 3 31 NV2.17224 2.74 9.0 94.4% feature · violin
Cluster 3 32 NV2.6422 4.20 8.9 81.5% feature · violin
Cluster 3 33 NV2.4318 6.83 8.9 72.2% feature · violin
Cluster 3 34 NV2.14379 8.39 8.8 70.4% feature · violin
Cluster 3 35 NV2.7827 8.49 8.7 70.4% feature · violin
Cluster 3 36 NV2.14138 4.56 8.7 75.9% feature · violin
Cluster 3 37 NV2.5824 4.10 8.6 79.6% feature · violin
Cluster 3 38 NV2.6477 6.46 8.6 70.4% feature · violin
Cluster 3 39 NV2.571 5.29 8.6 72.2% feature · violin
Cluster 3 40 NV2.977 30.73 8.6 68.5% feature · violin
Cluster 3 41 NV2.20657 8.05 8.3 66.7% feature · violin
Cluster 3 42 NV2.13537 2.47 8.2 90.7% feature · violin
Cluster 3 43 NV2.19504 3.20 8.1 83.3% feature · violin
Cluster 3 44 NV2.2115 3.33 8.1 79.6% feature · violin
Cluster 3 45 NV2.6247 5.09 8.0 66.7% feature · violin
Cluster 3 46 NV2.18716 2.85 7.8 87.0% feature · violin
Cluster 3 47 NV2.11142 3.79 7.8 70.4% feature · violin
Cluster 3 48 NV2.20247 2.93 7.8 92.6% feature · violin
Cluster 3 49 NV2.11647 3.12 7.8 77.8% feature · violin
Cluster 3 50 NV2.14319 4.45 7.7 66.7% feature · violin
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