Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.13538 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 XP_001641534.3 (NV2.12087) 3.87 11.5 88.9% feature · violin
Cluster 16 2 XP_001640689.1 (NV2.20404) 2.05 10.6 95.7% feature · violin
Cluster 16 3 NV2.23463 not mapped 2.47 10.3 83.8% feature · violin
Cluster 16 4 XP_032223693.1 (NV2.805) 2.44 10.1 83.8% feature · violin
Cluster 16 5 XP_032229634.2 (NV2.22761) 3.59 9.7 81.2% feature · violin
Cluster 16 6 XP_001636593.2 (NV2.16121) 3.17 9.5 81.2% feature · violin
Cluster 16 7 NV2.17840 not mapped 6.28 9.3 53.0% feature · violin
Cluster 16 8 NV2.20765 not mapped 1.56 9.1 92.3% feature · violin
Cluster 16 9 NV2.2719 not mapped 6.81 9.0 51.3% feature · violin
Cluster 16 10 XP_032240507.2 (NV2.18168) 2.38 8.8 74.4% feature · violin
Cluster 16 11 NV2.16593 not mapped 4.06 8.7 54.7% feature · violin
Cluster 16 12 XP_048586062.1 (NV2.20054) 2.22 8.6 86.3% feature · violin
Cluster 16 13 XP_001633226.2 (NV2.16897) 3.09 8.5 59.8% feature · violin
Cluster 16 14 XP_001629343.2 (NV2.12640) 1.39 7.8 87.2% feature · violin
Cluster 16 15 XP_001630598.2 (NV2.7700) 1.20 7.8 94.0% feature · violin
Cluster 16 16 XP_032231412.1 (NV2.4812) 2.53 7.7 63.2% feature · violin
Cluster 16 17 NV2.13751 not mapped 2.90 7.5 54.7% feature · violin
Cluster 16 18 XP_001640448.1 (NV2.7089) 3.45 7.5 49.6% feature · violin
Cluster 16 19 XP_001636551.2 (NV2.3783) 2.94 7.5 53.8% feature · violin
Cluster 16 20 XP_048585616.1 (NV2.17740) 4.25 7.5 46.2% feature · violin
Cluster 16 21 XP_001630069.1 (NV2.8119) 2.51 7.4 68.4% feature · violin
Cluster 16 22 XP_032235701.2 (NV2.488) 3.56 7.4 48.7% feature · violin
Cluster 16 23 NV2.25738 not mapped 2.74 7.4 56.4% feature · violin
Cluster 16 24 NV2.6667 not mapped 2.14 7.3 69.2% feature · violin
Cluster 16 25 XP_001632907.2 (NV2.13538) 2.10 7.0 60.7% feature · violin
Cluster 16 26 XP_032228005.1 (NV2.7614) 1.18 6.9 79.5% feature · violin
Cluster 16 27 XP_001631554.1 (NV2.15023) 5.32 6.8 39.3% feature · violin
Cluster 16 28 NV2.8891 not mapped 1.31 6.8 86.3% feature · violin
Cluster 16 29 XP_048585993.1 (NV2.1814) 2.11 6.7 58.1% feature · violin
Cluster 16 30 XP_032220199.2 (NV2.5277) 2.02 6.6 70.9% feature · violin
Cluster 16 31 XP_032220141.1 (NV2.25136) 4.93 6.4 37.6% feature · violin
Cluster 16 32 NV2.6151 not mapped 1.50 6.4 70.1% feature · violin
Cluster 16 33 XP_048580821.1 (NV2.252) 4.06 6.3 40.2% feature · violin
Cluster 16 34 XP_001629735.1 (NV2.17224) 1.39 6.3 72.6% feature · violin
Cluster 16 35 XP_001634797.3 (NV2.17595) 1.88 6.3 58.1% feature · violin
Cluster 16 36 NV2.17838 not mapped 4.44 6.2 37.6% feature · violin
Cluster 16 37 XP_032226875.2 (NV2.9665) 4.29 6.1 36.8% feature · violin
Cluster 16 38 XP_032233314.1 (NV2.6070) 5.48 6.1 35.0% feature · violin
Cluster 16 39 XP_048577184.1 (NV2.4529) 4.06 6.1 37.6% feature · violin
Cluster 16 40 XP_032232179.2 (NV2.1793) 2.59 6.0 47.0% feature · violin
Cluster 16 41 XP_048589653.1 (NV2.2716) 2.86 6.0 42.7% feature · violin
Cluster 16 42 XP_032219880.1 (NV2.2930) 2.48 5.9 44.4% feature · violin
Cluster 16 43 XP_001625746.2 (NV2.306) 2.57 5.9 45.3% feature · violin
Cluster 16 44 XP_032220197.1 (NV2.5258) 2.69 5.9 43.6% feature · violin
Cluster 16 45 XP_048587879.1 (NV2.2044) 2.89 5.8 41.9% feature · violin
Cluster 16 46 XP_001641755.2 (NV2.3507) 2.26 5.8 47.9% feature · violin
Cluster 16 47 NV2.13752 not mapped 5.29 5.8 33.3% feature · violin
Cluster 16 48 XP_001624056.3 (NV2.16655) 2.63 5.7 42.7% feature · violin
Cluster 16 49 XP_001641799.2 (NV2.3298) 2.01 5.6 53.8% feature · violin
Cluster 16 50 XP_032239081.1 (NV2.13878) 4.70 5.6 33.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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