Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.1448 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 NV2.24984 not mapped 8.94 7.5 100.0% feature · violin
Cluster 12 2 NV2.2881 not mapped 4.38 7.2 100.0% feature · violin
Cluster 12 3 XP_001628652.2 (NV2.5353) 5.55 7.1 100.0% feature · violin
Cluster 12 4 XP_001635435.2 (NV2.25312) 4.77 7.0 100.0% feature · violin
Cluster 12 5 XP_001630583.1 (NV2.7661) 4.47 7.0 100.0% feature · violin
Cluster 12 6 XP_001631344.2 (NV2.15805) 4.57 6.9 100.0% feature · violin
Cluster 12 7 XP_001636897.2 (NV2.8037) 6.05 6.9 94.7% feature · violin
Cluster 12 8 XP_001638395.1 (NV2.6171) 6.53 6.8 94.7% feature · violin
Cluster 12 9 XP_001630069.1 (NV2.8119) 6.16 6.8 100.0% feature · violin
Cluster 12 10 NV2.2594 not mapped 8.92 6.7 89.5% feature · violin
Cluster 12 11 XP_048587521.1 (NV2.24841) 8.38 6.7 89.5% feature · violin
Cluster 12 12 XP_032227123.2 (NV2.16663) 7.13 6.6 89.5% feature · violin
Cluster 12 13 NV2.25140 not mapped 6.32 6.5 89.5% feature · violin
Cluster 12 14 XP_048580148.1 (NV2.11736) 3.27 6.5 100.0% feature · violin
Cluster 12 15 XP_001622321.3 (NV2.6330) 14.68 6.3 84.2% feature · violin
Cluster 12 16 XP_032241419.1 (NV2.12560) 5.47 6.3 89.5% feature · violin
Cluster 12 17 XP_032223550.2 (NV2.10008) 11.48 6.3 84.2% feature · violin
Cluster 12 18 XP_032238125.2 (NV2.13650) 5.15 6.3 89.5% feature · violin
Cluster 12 19 XP_001630013.2 (NV2.3722) 4.97 6.2 89.5% feature · violin
Cluster 12 20 XP_001633226.2 (NV2.16897) 3.81 6.2 100.0% feature · violin
Cluster 12 21 NV2.1448 not mapped 6.89 6.2 84.2% feature · violin
Cluster 12 22 NV2.3719 not mapped 7.32 6.2 84.2% feature · violin
Cluster 12 23 XP_032234148.1 (NV2.16698) 4.39 6.2 94.7% feature · violin
Cluster 12 24 XP_001637495.3 (NV2.1162) 4.72 6.1 89.5% feature · violin
Cluster 12 25 XP_032218506.1 (NV2.4684) 4.67 6.1 89.5% feature · violin
Cluster 12 26 XP_001639100.2 (NV2.2977) 4.04 6.0 89.5% feature · violin
Cluster 12 27 XP_001633937.2 (NV2.16205) 7.18 6.0 84.2% feature · violin
Cluster 12 28 XP_001640286.1 (NV2.874) 5.71 6.0 84.2% feature · violin
Cluster 12 29 XP_048588027.1 (NV2.21848) 4.21 6.0 89.5% feature · violin
Cluster 12 30 XP_032239563.2 (NV2.12001) 4.67 5.9 89.5% feature · violin
Cluster 12 31 XP_032235860.1 (NV2.19883) 9.31 5.9 78.9% feature · violin
Cluster 12 32 XP_032243207.2 (NV2.22355) 3.99 5.9 94.7% feature · violin
Cluster 12 33 XP_032237494.2 (NV2.3875) 7.83 5.9 78.9% feature · violin
Cluster 12 34 XP_032239608.1 (NV2.23250) 2.52 5.9 100.0% feature · violin
Cluster 12 35 XP_001630599.1 (NV2.7698) 3.98 5.8 89.5% feature · violin
Cluster 12 36 NV2.1027 not mapped 7.78 5.8 78.9% feature · violin
Cluster 12 37 XP_001641336.2 (NV2.17964) 4.93 5.8 89.5% feature · violin
Cluster 12 38 XP_048580793.1 (NV2.13257) 3.54 5.8 94.7% feature · violin
Cluster 12 39 XP_032241538.2 (NV2.1400) 3.80 5.8 89.5% feature · violin
Cluster 12 40 NV2.2717 not mapped 5.97 5.7 78.9% feature · violin
Cluster 12 41 XP_032240507.2 (NV2.18168) 3.19 5.7 100.0% feature · violin
Cluster 12 42 XP_001628139.2 (NV2.1088) 5.46 5.6 78.9% feature · violin
Cluster 12 43 NV2.8367 not mapped 3.70 5.6 94.7% feature · violin
Cluster 12 44 NV2.3465 not mapped 5.19 5.6 78.9% feature · violin
Cluster 12 45 XP_001623054.1 (NV2.24192) 3.17 5.5 94.7% feature · violin
Cluster 12 46 XP_001632219.1 (NV2.19525) 5.20 5.5 78.9% feature · violin
Cluster 12 47 XP_001626821.3 (NV2.10250) 8.52 5.5 73.7% feature · violin
Cluster 12 48 XP_032218050.1 (NV2.23418) 8.37 5.5 73.7% feature · violin
Cluster 12 49 XP_001632252.1 (NV2.19498) 3.64 5.5 84.2% feature · violin
Cluster 12 50 NV2.10311 not mapped 8.25 5.5 73.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 11 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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