Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 5163 Cluster 7162 Cluster 1145 Cluster 0134 Cluster 14130 Cluster 16117 Cluster 1899 Cluster 1377 Cluster 466 Cluster 1064 Cluster 2162 Cluster 354 Cluster 845 Cluster 1745 Cluster 942 Cluster 1541 Cluster 1137 Cluster 2232 Cluster 229 Cluster 1921 Cluster 619 Cluster 1219 Cluster 2011
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.15541 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 20 1 NV2.4019 11.37 5.7 100.0% feature · violin
Cluster 20 2 NV2.15541 1.97 4.5 100.0% feature · violin
Cluster 20 3 NV2.20205 2.27 4.3 100.0% feature · violin
Cluster 20 4 NV2.7700 2.03 4.3 100.0% feature · violin
Cluster 20 5 NV2.23463 3.11 4.3 90.9% feature · violin
Cluster 20 6 NV2.13562 4.53 4.2 81.8% feature · violin
Cluster 20 7 NV2.19585 4.51 4.1 81.8% feature · violin
Cluster 20 8 NV2.7614 2.25 4.1 100.0% feature · violin
Cluster 20 9 NV2.2713 1.61 3.9 100.0% feature · violin
Cluster 20 10 NV2.12087 3.93 3.7 90.9% feature · violin
Cluster 20 11 NV2.16572 14.39 3.6 63.6% feature · violin
Cluster 20 12 NV2.1972 2.85 3.6 81.8% feature · violin
Cluster 20 13 NV2.22373 5.67 3.5 63.6% feature · violin
Cluster 20 14 NV2.13578 5.48 3.5 63.6% feature · violin
Cluster 20 15 NV2.20765 2.02 3.5 100.0% feature · violin
Cluster 20 16 NV2.11161 2.25 3.5 100.0% feature · violin
Cluster 20 17 NV2.13659 5.64 3.5 63.6% feature · violin
Cluster 20 18 NV2.7915 1.87 3.5 100.0% feature · violin
Cluster 20 19 NV2.17838 5.50 3.5 63.6% feature · violin
Cluster 20 20 NV2.12640 2.07 3.4 100.0% feature · violin
Cluster 20 21 NV2.19595 3.16 3.4 72.7% feature · violin
Cluster 20 22 NV2.2003 2.32 3.3 81.8% feature · violin
Cluster 20 23 NV2.17740 4.49 3.3 63.6% feature · violin
Cluster 20 24 NV2.20761 1.62 3.3 100.0% feature · violin
Cluster 20 25 NV2.16574 33.10 3.1 54.5% feature · violin
Cluster 20 26 NV2.10351 12.12 3.1 54.5% feature · violin
Cluster 20 27 NV2.13522 13.02 3.1 54.5% feature · violin
Cluster 20 28 NV2.1639 3.52 3.1 63.6% feature · violin
Cluster 20 29 NV2.3452 2.34 3.0 72.7% feature · violin
Cluster 20 30 NV2.1062 1.68 3.0 100.0% feature · violin
Cluster 20 31 NV2.22761 3.43 3.0 81.8% feature · violin
Cluster 20 32 NV2.3776 2.57 3.0 72.7% feature · violin
Cluster 20 33 NV2.3337 1.90 2.9 81.8% feature · violin
Cluster 20 34 NV2.20404 1.81 2.9 100.0% feature · violin
Cluster 20 35 NV2.25738 3.12 2.9 63.6% feature · violin
Cluster 20 36 NV2.8891 1.98 2.8 100.0% feature · violin
Cluster 20 37 NV2.1060 2.21 2.8 72.7% feature · violin
Cluster 20 38 NV2.6667 2.30 2.7 72.7% feature · violin
Cluster 20 39 NV2.25004 2.20 2.6 81.8% feature · violin
Cluster 20 40 NV2.5277 2.49 2.6 81.8% feature · violin
Cluster 20 41 NV2.21636 10.06 2.6 45.5% feature · violin
Cluster 20 42 NV2.4412 11.30 2.6 45.5% feature · violin
Cluster 20 43 NV2.3616 10.52 2.6 45.5% feature · violin
Cluster 20 44 NV2.399 6.85 2.6 45.5% feature · violin
Cluster 20 45 NV2.3279 6.14 2.5 45.5% feature · violin
Cluster 20 46 NV2.18517 5.42 2.5 45.5% feature · violin
Cluster 20 47 NV2.2930 3.34 2.5 54.5% feature · violin
Cluster 20 48 NV2.17865 1.78 2.5 100.0% feature · violin
Cluster 20 49 NV2.3512 4.83 2.4 45.5% feature · violin
Cluster 20 50 NV2.6961 1.74 2.3 72.7% feature · violin
TOP