Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.16092 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 NV2.24159 not mapped 8.86 11.4 84.4% feature · violin
Cluster 10 2 NV2.14941 not mapped 7.79 10.2 76.6% feature · violin
Cluster 10 3 NV2.22547 not mapped 1.51 8.7 100.0% feature · violin
Cluster 10 4 NV2.25609 not mapped 11.63 8.5 62.5% feature · violin
Cluster 10 5 NV2.13562 not mapped 4.09 8.2 70.3% feature · violin
Cluster 10 6 XP_001636829.2 (NV2.11584) 6.29 8.1 62.5% feature · violin
Cluster 10 7 XP_048586119.1 (NV2.19749) 12.04 8.1 59.4% feature · violin
Cluster 10 8 XP_001638029.2 (NV2.4530) 9.96 7.8 57.8% feature · violin
Cluster 10 9 NV2.160 not mapped 8.10 7.7 57.8% feature · violin
Cluster 10 10 XP_032219264.1 (NV2.14538) 2.35 7.7 87.5% feature · violin
Cluster 10 11 NV2.24170 not mapped 4.29 7.6 64.1% feature · violin
Cluster 10 12 NV2.4072 not mapped 3.95 7.5 67.2% feature · violin
Cluster 10 13 XP_001641667.2 (NV2.3272) 4.64 7.1 57.8% feature · violin
Cluster 10 14 XP_001637837.1 (NV2.24075) 5.26 7.0 54.7% feature · violin
Cluster 10 15 NV2.50 not mapped 7.66 7.0 53.1% feature · violin
Cluster 10 16 XP_048581979.1 (NV2.17269) 9.35 6.6 48.4% feature · violin
Cluster 10 17 XP_032234687.1 (NV2.187) 5.14 6.6 51.6% feature · violin
Cluster 10 18 XP_048583690.1 (NV2.22943) 7.56 6.5 48.4% feature · violin
Cluster 10 19 XP_032242349.2 (NV2.16092) 5.30 6.4 50.0% feature · violin
Cluster 10 20 XP_001629778.3 (NV2.19163) 3.10 6.3 59.4% feature · violin
Cluster 10 21 NV2.19306 not mapped 1.19 6.3 95.3% feature · violin
Cluster 10 22 XP_048587789.1 (NV2.25118) 4.11 6.2 51.6% feature · violin
Cluster 10 23 NV2.18830 not mapped 3.31 6.1 57.8% feature · violin
Cluster 10 24 XP_048590651.1 (NV2.5778) 2.94 6.1 60.9% feature · violin
Cluster 10 25 NV2.9120 not mapped 8.82 6.1 45.3% feature · violin
Cluster 10 26 NV2.9370 not mapped 5.26 6.0 46.9% feature · violin
Cluster 10 27 NV2.4122 not mapped 2.65 5.9 60.9% feature · violin
Cluster 10 28 NV2.18301 not mapped 8.05 5.9 43.8% feature · violin
Cluster 10 29 XP_048586172.1 (NV2.20419) 8.27 5.9 43.8% feature · violin
Cluster 10 30 XP_001637976.1 (NV2.4680) 2.11 5.9 68.8% feature · violin
Cluster 10 31 XP_001641534.3 (NV2.12087) 2.56 5.7 81.2% feature · violin
Cluster 10 32 XP_001630917.2 (NV2.8967) 3.79 5.7 50.0% feature · violin
Cluster 10 33 XP_032228056.2 (NV2.2195) 3.63 5.6 48.4% feature · violin
Cluster 10 34 XP_032219880.1 (NV2.2930) 2.81 5.5 53.1% feature · violin
Cluster 10 35 XP_001640041.1 (NV2.7058) 4.06 5.5 45.3% feature · violin
Cluster 10 36 XP_032225893.1 (NV2.24780) 10.63 5.5 40.6% feature · violin
Cluster 10 37 XP_032228041.1 (NV2.25233) 3.94 5.5 45.3% feature · violin
Cluster 10 38 XP_001632008.1 (NV2.22542) 2.46 5.5 60.9% feature · violin
Cluster 10 39 NV2.6028 not mapped 3.48 5.5 48.4% feature · violin
Cluster 10 40 XP_032240741.2 (NV2.19036) 3.64 5.3 46.9% feature · violin
Cluster 10 41 XP_032240294.2 (NV2.10973) 2.87 5.3 51.6% feature · violin
Cluster 10 42 XP_048590136.1 (NV2.6430) 2.54 5.3 56.2% feature · violin
Cluster 10 43 XP_048576864.1 (NV2.4676) 8.82 5.3 39.1% feature · violin
Cluster 10 44 NV2.25610 not mapped 8.16 5.3 39.1% feature · violin
Cluster 10 45 XP_032234099.2 (NV2.16733) 4.39 5.3 42.2% feature · violin
Cluster 10 46 XP_048585260.1 (NV2.17644) 3.93 5.2 43.8% feature · violin
Cluster 10 47 NV2.206 not mapped 4.06 5.2 43.8% feature · violin
Cluster 10 48 XP_001639854.2 (NV2.14408) 6.73 5.2 39.1% feature · violin
Cluster 10 49 XP_048587439.1 (NV2.24360) 6.57 5.2 39.1% feature · violin
Cluster 10 50 NV2.21296 not mapped 6.05 5.1 39.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 19 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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