Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.16216 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 6 1 NV2.8165 not mapped 8.83 6.3 84.2% feature · violin
Cluster 6 2 NV2.22692 not mapped 2.36 5.4 100.0% feature · violin
Cluster 6 3 XP_001623803.3 (NV2.17808) 10.74 5.1 68.4% feature · violin
Cluster 6 4 NV2.1150 not mapped 8.06 5.1 68.4% feature · violin
Cluster 6 5 NV2.13528 not mapped 8.38 5.0 68.4% feature · violin
Cluster 6 6 XP_032219717.1 (NV2.757) 8.88 4.7 63.2% feature · violin
Cluster 6 7 XP_032241950.1 (NV2.25475) 7.38 4.6 63.2% feature · violin
Cluster 6 8 NV2.8638 not mapped 7.52 4.6 63.2% feature · violin
Cluster 6 9 NV2.13030 not mapped 1.62 4.5 100.0% feature · violin
Cluster 6 10 NV2.6264 not mapped 2.76 4.3 100.0% feature · violin
Cluster 6 11 NV2.24576 not mapped 1.57 4.2 100.0% feature · violin
Cluster 6 12 NV2.15977 not mapped 1.69 4.2 84.2% feature · violin
Cluster 6 13 NV2.10277 not mapped 1.43 4.1 84.2% feature · violin
Cluster 6 14 XP_001629285.1 (NV2.23520) 2.30 4.0 78.9% feature · violin
Cluster 6 15 XP_048590209.1 (NV2.1253) 8.96 3.9 52.6% feature · violin
Cluster 6 16 XP_048580244.1 (NV2.814) 9.08 3.9 52.6% feature · violin
Cluster 6 17 XP_001628822.3 (NV2.19727) 6.73 3.9 52.6% feature · violin
Cluster 6 18 XP_001627013.1 (NV2.4389) 1.96 3.8 84.2% feature · violin
Cluster 6 19 XP_001641455.1 (NV2.12154) 1.63 3.6 94.7% feature · violin
Cluster 6 20 XP_048580962.1 (NV2.14333) 11.52 3.6 47.4% feature · violin
Cluster 6 21 NV2.8375 not mapped 9.41 3.5 47.4% feature · violin
Cluster 6 22 XP_001635775.2 (NV2.9784) 1.88 3.5 78.9% feature · violin
Cluster 6 23 NV2.4056 not mapped 5.57 3.4 47.4% feature · violin
Cluster 6 24 XP_001631282.1 (NV2.4738) 1.03 3.1 100.0% feature · violin
Cluster 6 25 NV2.14123 not mapped 8.26 3.1 42.1% feature · violin
Cluster 6 26 XP_032241931.2 (NV2.25524) 6.97 3.1 42.1% feature · violin
Cluster 6 27 XP_048590651.1 (NV2.5778) 2.63 3.1 57.9% feature · violin
Cluster 6 28 NV2.19293 not mapped 1.72 3.1 78.9% feature · violin
Cluster 6 29 NV2.22949 not mapped 6.22 3.1 42.1% feature · violin
Cluster 6 30 XP_001633985.2 (NV2.16216) 6.04 3.1 42.1% feature · violin
Cluster 6 31 NV2.25931 not mapped 1.38 3.0 100.0% feature · violin
Cluster 6 32 XP_032238316.2 (NV2.16893) 6.56 3.0 42.1% feature · violin
Cluster 6 33 NV2.11038 not mapped 0.82 3.0 100.0% feature · violin
Cluster 6 34 XP_001631593.2 (NV2.23891) 1.49 2.9 73.7% feature · violin
Cluster 6 35 XP_001634364.3 (NV2.24371) 4.62 2.8 42.1% feature · violin
Cluster 6 36 XP_032234801.1 (NV2.6663) 3.83 2.8 42.1% feature · violin
Cluster 6 37 XP_001625522.3 (NV2.13248) 11.14 2.8 36.8% feature · violin
Cluster 6 38 NV2.17576 not mapped 9.70 2.8 36.8% feature · violin
Cluster 6 39 XP_001625511.1 (NV2.13249) 8.96 2.7 36.8% feature · violin
Cluster 6 40 XP_032241744.1 (NV2.19444) 6.57 2.7 36.8% feature · violin
Cluster 6 41 XP_048578567.1 (NV2.10145) 5.95 2.7 36.8% feature · violin
Cluster 6 42 NV2.5414 not mapped 4.75 2.6 36.8% feature · violin
Cluster 6 43 XP_001626548.1 (NV2.23063) 1.22 2.6 73.7% feature · violin
Cluster 6 44 XP_048584365.1 (NV2.1163) 1.06 2.5 94.7% feature · violin
Cluster 6 45 NV2.17800 not mapped 1.11 2.5 78.9% feature · violin
Cluster 6 46 NV2.11442 not mapped 3.84 2.5 36.8% feature · violin
Cluster 6 47 NV2.4648 not mapped 3.49 2.4 36.8% feature · violin
Cluster 6 48 XP_032229700.2 (NV2.17536) 9.23 2.4 31.6% feature · violin
Cluster 6 49 XP_001631457.1 (NV2.15875) 9.17 2.4 31.6% feature · violin
Cluster 6 50 XP_001640920.3 (NV2.11895) 7.24 2.3 31.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 22 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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