Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 5163 Cluster 7162 Cluster 1145 Cluster 0134 Cluster 14130 Cluster 16117 Cluster 1899 Cluster 1377 Cluster 466 Cluster 1064 Cluster 2162 Cluster 354 Cluster 845 Cluster 1745 Cluster 942 Cluster 1541 Cluster 1137 Cluster 2232 Cluster 229 Cluster 1921 Cluster 619 Cluster 1219 Cluster 2011
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.16897 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 NV2.12087 3.87 11.5 88.9% feature · violin
Cluster 16 2 NV2.20404 2.05 10.6 95.7% feature · violin
Cluster 16 3 NV2.23463 2.47 10.3 83.8% feature · violin
Cluster 16 4 NV2.805 2.44 10.1 83.8% feature · violin
Cluster 16 5 NV2.22761 3.59 9.7 81.2% feature · violin
Cluster 16 6 NV2.16121 3.17 9.5 81.2% feature · violin
Cluster 16 7 NV2.17840 6.28 9.3 53.0% feature · violin
Cluster 16 8 NV2.20765 1.56 9.1 92.3% feature · violin
Cluster 16 9 NV2.2719 6.81 9.0 51.3% feature · violin
Cluster 16 10 NV2.18168 2.38 8.8 74.4% feature · violin
Cluster 16 11 NV2.16593 4.06 8.7 54.7% feature · violin
Cluster 16 12 NV2.20054 2.22 8.6 86.3% feature · violin
Cluster 16 13 NV2.16897 3.09 8.5 59.8% feature · violin
Cluster 16 14 NV2.12640 1.39 7.8 87.2% feature · violin
Cluster 16 15 NV2.7700 1.20 7.8 94.0% feature · violin
Cluster 16 16 NV2.4812 2.53 7.7 63.2% feature · violin
Cluster 16 17 NV2.13751 2.90 7.5 54.7% feature · violin
Cluster 16 18 NV2.7089 3.45 7.5 49.6% feature · violin
Cluster 16 19 NV2.3783 2.94 7.5 53.8% feature · violin
Cluster 16 20 NV2.17740 4.25 7.5 46.2% feature · violin
Cluster 16 21 NV2.8119 2.51 7.4 68.4% feature · violin
Cluster 16 22 NV2.488 3.56 7.4 48.7% feature · violin
Cluster 16 23 NV2.25738 2.74 7.4 56.4% feature · violin
Cluster 16 24 NV2.6667 2.14 7.3 69.2% feature · violin
Cluster 16 25 NV2.13538 2.10 7.0 60.7% feature · violin
Cluster 16 26 NV2.7614 1.18 6.9 79.5% feature · violin
Cluster 16 27 NV2.15023 5.32 6.8 39.3% feature · violin
Cluster 16 28 NV2.8891 1.31 6.8 86.3% feature · violin
Cluster 16 29 NV2.1814 2.11 6.7 58.1% feature · violin
Cluster 16 30 NV2.5277 2.02 6.6 70.9% feature · violin
Cluster 16 31 NV2.25136 4.93 6.4 37.6% feature · violin
Cluster 16 32 NV2.6151 1.50 6.4 70.1% feature · violin
Cluster 16 33 NV2.252 4.06 6.3 40.2% feature · violin
Cluster 16 34 NV2.17224 1.39 6.3 72.6% feature · violin
Cluster 16 35 NV2.17595 1.88 6.3 58.1% feature · violin
Cluster 16 36 NV2.17838 4.44 6.2 37.6% feature · violin
Cluster 16 37 NV2.9665 4.29 6.1 36.8% feature · violin
Cluster 16 38 NV2.6070 5.48 6.1 35.0% feature · violin
Cluster 16 39 NV2.4529 4.06 6.1 37.6% feature · violin
Cluster 16 40 NV2.1793 2.59 6.0 47.0% feature · violin
Cluster 16 41 NV2.2716 2.86 6.0 42.7% feature · violin
Cluster 16 42 NV2.2930 2.48 5.9 44.4% feature · violin
Cluster 16 43 NV2.306 2.57 5.9 45.3% feature · violin
Cluster 16 44 NV2.5258 2.69 5.9 43.6% feature · violin
Cluster 16 45 NV2.2044 2.89 5.8 41.9% feature · violin
Cluster 16 46 NV2.3507 2.26 5.8 47.9% feature · violin
Cluster 16 47 NV2.13752 5.29 5.8 33.3% feature · violin
Cluster 16 48 NV2.16655 2.63 5.7 42.7% feature · violin
Cluster 16 49 NV2.3298 2.01 5.6 53.8% feature · violin
Cluster 16 50 NV2.13878 4.70 5.6 33.3% feature · violin
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