Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.17838 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 20 1 NV2.4019 not mapped 11.37 5.7 100.0% feature · violin
Cluster 20 2 NV2.15541 not mapped 1.97 4.5 100.0% feature · violin
Cluster 20 3 XP_001633323.2 (NV2.20205) 2.27 4.3 100.0% feature · violin
Cluster 20 4 XP_001630598.2 (NV2.7700) 2.03 4.3 100.0% feature · violin
Cluster 20 5 NV2.23463 not mapped 3.11 4.3 90.9% feature · violin
Cluster 20 6 NV2.13562 not mapped 4.53 4.2 81.8% feature · violin
Cluster 20 7 XP_048586246.1 (NV2.19585) 4.51 4.1 81.8% feature · violin
Cluster 20 8 XP_032228005.1 (NV2.7614) 2.25 4.1 100.0% feature · violin
Cluster 20 9 NV2.2713 not mapped 1.61 3.9 100.0% feature · violin
Cluster 20 10 XP_001641534.3 (NV2.12087) 3.93 3.7 90.9% feature · violin
Cluster 20 11 NV2.16572 not mapped 14.39 3.6 63.6% feature · violin
Cluster 20 12 NV2.1972 not mapped 2.85 3.6 81.8% feature · violin
Cluster 20 13 XP_048588808.1 (NV2.22373) 5.67 3.5 63.6% feature · violin
Cluster 20 14 XP_001632927.3 (NV2.13578) 5.48 3.5 63.6% feature · violin
Cluster 20 15 NV2.20765 not mapped 2.02 3.5 100.0% feature · violin
Cluster 20 16 XP_032229515.2 (NV2.11161) 2.25 3.5 100.0% feature · violin
Cluster 20 17 XP_032238021.2 (NV2.13659) 5.64 3.5 63.6% feature · violin
Cluster 20 18 XP_001630142.2 (NV2.7915) 1.87 3.5 100.0% feature · violin
Cluster 20 19 NV2.17838 not mapped 5.50 3.5 63.6% feature · violin
Cluster 20 20 XP_001629343.2 (NV2.12640) 2.07 3.4 100.0% feature · violin
Cluster 20 21 XP_048586242.1 (NV2.19595) 3.16 3.4 72.7% feature · violin
Cluster 20 22 XP_001632669.1 (NV2.2003) 2.32 3.3 81.8% feature · violin
Cluster 20 23 XP_048585616.1 (NV2.17740) 4.49 3.3 63.6% feature · violin
Cluster 20 24 XP_032234576.2 (NV2.20761) 1.62 3.3 100.0% feature · violin
Cluster 20 25 XP_048582034.1 (NV2.16574) 33.10 3.1 54.5% feature · violin
Cluster 20 26 XP_032237737.2 (NV2.10351) 12.12 3.1 54.5% feature · violin
Cluster 20 27 XP_032237897.2 (NV2.13522) 13.02 3.1 54.5% feature · violin
Cluster 20 28 NV2.1639 not mapped 3.52 3.1 63.6% feature · violin
Cluster 20 29 NV2.3452 not mapped 2.34 3.0 72.7% feature · violin
Cluster 20 30 NV2.1062 not mapped 1.68 3.0 100.0% feature · violin
Cluster 20 31 XP_032229634.2 (NV2.22761) 3.43 3.0 81.8% feature · violin
Cluster 20 32 XP_032242135.1 (NV2.3776) 2.57 3.0 72.7% feature · violin
Cluster 20 33 XP_001641693.2 (NV2.3337) 1.90 2.9 81.8% feature · violin
Cluster 20 34 XP_001640689.1 (NV2.20404) 1.81 2.9 100.0% feature · violin
Cluster 20 35 NV2.25738 not mapped 3.12 2.9 63.6% feature · violin
Cluster 20 36 NV2.8891 not mapped 1.98 2.8 100.0% feature · violin
Cluster 20 37 NV2.1060 not mapped 2.21 2.8 72.7% feature · violin
Cluster 20 38 NV2.6667 not mapped 2.30 2.7 72.7% feature · violin
Cluster 20 39 XP_001635389.2 (NV2.25004) 2.20 2.6 81.8% feature · violin
Cluster 20 40 XP_032220199.2 (NV2.5277) 2.49 2.6 81.8% feature · violin
Cluster 20 41 XP_032232433.1 (NV2.21636) 10.06 2.6 45.5% feature · violin
Cluster 20 42 XP_048576991.1 (NV2.4412) 11.30 2.6 45.5% feature · violin
Cluster 20 43 XP_048589553.1 (NV2.3616) 10.52 2.6 45.5% feature · violin
Cluster 20 44 XP_048587156.1 (NV2.399) 6.85 2.6 45.5% feature · violin
Cluster 20 45 XP_032223098.1 (NV2.3279) 6.14 2.5 45.5% feature · violin
Cluster 20 46 XP_032220615.1 (NV2.18517) 5.42 2.5 45.5% feature · violin
Cluster 20 47 XP_032219880.1 (NV2.2930) 3.34 2.5 54.5% feature · violin
Cluster 20 48 XP_032222519.2 (NV2.17865) 1.78 2.5 100.0% feature · violin
Cluster 20 49 XP_032223086.1 (NV2.3512) 4.83 2.4 45.5% feature · violin
Cluster 20 50 XP_001640083.2 (NV2.6961) 1.74 2.3 72.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 16 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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