Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.1785 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 14 1 XP_001633323.2 (NV2.20205) 2.50 16.0 100.0% feature · violin
Cluster 14 2 XP_032237477.1 (NV2.3891) 3.70 15.7 98.5% feature · violin
Cluster 14 3 XP_032229861.1 (NV2.23465) 8.31 15.5 83.1% feature · violin
Cluster 14 4 XP_032241044.1 (NV2.21886) 2.35 14.2 93.8% feature · violin
Cluster 14 5 XP_032222519.2 (NV2.17865) 2.77 14.2 96.9% feature · violin
Cluster 14 6 XP_048586062.1 (NV2.20054) 3.31 13.6 92.3% feature · violin
Cluster 14 7 XP_048588459.1 (NV2.1969) 2.19 13.4 100.0% feature · violin
Cluster 14 8 XP_032236866.1 (NV2.22508) 2.90 13.3 96.2% feature · violin
Cluster 14 9 XP_032242894.2 (NV2.13142) 4.52 12.8 74.6% feature · violin
Cluster 14 10 XP_001641534.3 (NV2.12087) 4.05 12.7 92.3% feature · violin
Cluster 14 11 XP_032229634.2 (NV2.22761) 4.35 12.5 89.2% feature · violin
Cluster 14 12 XP_048588429.1 (NV2.1724) 2.07 12.4 98.5% feature · violin
Cluster 14 13 NV2.18216 not mapped 8.47 12.3 65.4% feature · violin
Cluster 14 14 NV2.21644 not mapped 3.43 11.8 80.8% feature · violin
Cluster 14 15 NV2.15541 not mapped 1.58 11.7 100.0% feature · violin
Cluster 14 16 XP_001640903.2 (NV2.1654) 1.96 11.2 96.9% feature · violin
Cluster 14 17 XP_032232175.2 (NV2.1785) 1.51 10.8 97.7% feature · violin
Cluster 14 18 XP_001636593.2 (NV2.16121) 3.39 10.4 79.2% feature · violin
Cluster 14 19 XP_001630142.2 (NV2.7915) 1.65 10.0 94.6% feature · violin
Cluster 14 20 NV2.23463 not mapped 2.18 9.7 83.1% feature · violin
Cluster 14 21 XP_001640689.1 (NV2.20404) 1.64 9.4 93.1% feature · violin
Cluster 14 22 XP_048576176.1 (NV2.7054) 2.98 9.2 64.6% feature · violin
Cluster 14 23 NV2.6264 not mapped 2.52 8.8 100.0% feature · violin
Cluster 14 24 XP_001639607.2 (NV2.16504) 4.76 8.5 48.5% feature · violin
Cluster 14 25 XP_001630598.2 (NV2.7700) 1.32 8.3 96.9% feature · violin
Cluster 14 26 XP_032220199.2 (NV2.5277) 2.40 8.3 72.3% feature · violin
Cluster 14 27 XP_001630583.1 (NV2.7661) 2.66 8.1 98.5% feature · violin
Cluster 14 28 XP_048587964.1 (NV2.20680) 4.81 8.1 46.2% feature · violin
Cluster 14 29 XP_001639806.1 (NV2.23603) 1.51 8.1 79.2% feature · violin
Cluster 14 30 NV2.1062 not mapped 1.20 8.0 96.9% feature · violin
Cluster 14 31 NV2.12864 not mapped 7.19 7.9 42.3% feature · violin
Cluster 14 32 XP_032220987.2 (NV2.14359) 4.99 7.7 43.1% feature · violin
Cluster 14 33 XP_048589872.1 (NV2.10942) 1.37 7.6 82.3% feature · violin
Cluster 14 34 NV2.24723 not mapped 2.32 7.6 60.8% feature · violin
Cluster 14 35 XP_001638316.3 (NV2.6134) 1.92 7.5 65.4% feature · violin
Cluster 14 36 XP_032221597.1 (NV2.7246) 1.74 7.3 67.7% feature · violin
Cluster 14 37 XP_032232824.1 (NV2.4216) 3.82 7.2 43.8% feature · violin
Cluster 14 38 XP_032217995.1 (NV2.23331) 1.99 7.2 62.3% feature · violin
Cluster 14 39 XP_032234576.2 (NV2.20761) 1.15 7.1 96.2% feature · violin
Cluster 14 40 XP_048587664.1 (NV2.1337) 1.80 6.9 65.4% feature · violin
Cluster 14 41 XP_001640083.2 (NV2.6961) 1.68 6.8 69.2% feature · violin
Cluster 14 42 XP_048590339.1 (NV2.6432) 2.60 6.7 49.2% feature · violin
Cluster 14 43 XP_032228005.1 (NV2.7614) 1.12 6.5 83.1% feature · violin
Cluster 14 44 XP_001637390.1 (NV2.1237) 2.05 6.5 55.4% feature · violin
Cluster 14 45 NV2.3755 not mapped 1.53 6.5 64.6% feature · violin
Cluster 14 46 XP_001629343.2 (NV2.12640) 1.19 6.4 90.0% feature · violin
Cluster 14 47 NV2.24576 not mapped 0.88 6.4 93.8% feature · violin
Cluster 14 48 XP_032233122.2 (NV2.7410) 1.39 6.3 68.5% feature · violin
Cluster 14 49 XP_032239984.1 (NV2.7354) 1.47 6.1 76.9% feature · violin
Cluster 14 50 XP_048584944.1 (NV2.19104) 1.20 6.1 74.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 10 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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