Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.19104 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 11 1 XP_001630583.1 (NV2.7661) 3.63 7.7 100.0% feature · violin
Cluster 11 2 XP_001630069.1 (NV2.8119) 3.72 6.4 83.8% feature · violin
Cluster 11 3 XP_001640236.3 (NV2.1024) 2.45 6.2 89.2% feature · violin
Cluster 11 4 XP_001640689.1 (NV2.20404) 2.21 6.0 100.0% feature · violin
Cluster 11 5 XP_032238357.2 (NV2.20203) 1.32 6.0 97.3% feature · violin
Cluster 11 6 XP_032232817.1 (NV2.4239) 2.66 6.0 81.1% feature · violin
Cluster 11 7 XP_032241099.1 (NV2.10789) 3.65 5.4 62.2% feature · violin
Cluster 11 8 XP_001637641.2 (NV2.23310) 1.91 5.1 91.9% feature · violin
Cluster 11 9 NV2.2713 not mapped 1.21 5.0 91.9% feature · violin
Cluster 11 10 XP_032239608.1 (NV2.23250) 1.43 4.9 89.2% feature · violin
Cluster 11 11 XP_032243226.1 (NV2.22443) 7.14 4.7 45.9% feature · violin
Cluster 11 12 NV2.1062 not mapped 1.08 4.7 89.2% feature · violin
Cluster 11 13 XP_048584379.1 (NV2.1783) 2.74 4.7 62.2% feature · violin
Cluster 11 14 NV2.1063 not mapped 1.42 4.7 86.5% feature · violin
Cluster 11 15 XP_001641710.2 (NV2.3378) 5.91 4.6 45.9% feature · violin
Cluster 11 16 NV2.22692 not mapped 1.29 4.5 81.1% feature · violin
Cluster 11 17 NV2.12439 not mapped 1.52 4.3 78.4% feature · violin
Cluster 11 18 NV2.4071 not mapped 1.78 4.3 70.3% feature · violin
Cluster 11 19 NV2.4446 not mapped 2.27 4.1 64.9% feature · violin
Cluster 11 20 XP_048586062.1 (NV2.20054) 1.80 4.0 75.7% feature · violin
Cluster 11 21 NV2.1066 not mapped 1.18 4.0 78.4% feature · violin
Cluster 11 22 NV2.14515 not mapped 1.82 3.9 73.0% feature · violin
Cluster 11 23 XP_048588816.1 (NV2.22235) 6.10 3.8 37.8% feature · violin
Cluster 11 24 XP_032228005.1 (NV2.7614) 1.16 3.8 86.5% feature · violin
Cluster 11 25 XP_001622285.2 (NV2.10401) 2.71 3.5 45.9% feature · violin
Cluster 11 26 XP_032232175.2 (NV2.1785) 1.03 3.4 97.3% feature · violin
Cluster 11 27 NV2.15541 not mapped 0.99 3.4 100.0% feature · violin
Cluster 11 28 XP_001632606.2 (NV2.4442) 1.06 3.4 73.0% feature · violin
Cluster 11 29 XP_048584944.1 (NV2.19104) 1.10 3.4 67.6% feature · violin
Cluster 11 30 XP_048583586.1 (NV2.23890) 1.85 3.3 54.1% feature · violin
Cluster 11 31 NV2.8176 not mapped 2.92 3.2 40.5% feature · violin
Cluster 11 32 XP_032217718.1 (NV2.1313) 4.77 3.1 32.4% feature · violin
Cluster 11 33 NV2.1433 not mapped 3.25 3.1 37.8% feature · violin
Cluster 11 34 XP_001639806.1 (NV2.23603) 0.99 3.0 64.9% feature · violin
Cluster 11 35 XP_032241038.2 (NV2.21870) 2.63 3.0 40.5% feature · violin
Cluster 11 36 NV2.8893 not mapped 1.97 3.0 51.4% feature · violin
Cluster 11 37 XP_001629343.2 (NV2.12640) 0.97 3.0 83.8% feature · violin
Cluster 11 38 XP_001635381.1 (NV2.25016) 0.87 2.9 75.7% feature · violin
Cluster 11 39 XP_001633435.2 (NV2.17004) 1.14 2.9 59.5% feature · violin
Cluster 11 40 XP_032243207.2 (NV2.22355) 2.09 2.9 45.9% feature · violin
Cluster 11 41 XP_032240780.1 (NV2.148) 2.42 2.9 40.5% feature · violin
Cluster 11 42 XP_032237946.2 (NV2.13531) 0.88 2.8 86.5% feature · violin
Cluster 11 43 XP_032237477.1 (NV2.3891) 1.38 2.8 86.5% feature · violin
Cluster 11 44 NV2.773 not mapped 3.34 2.8 32.4% feature · violin
Cluster 11 45 NV2.21015 not mapped 2.37 2.8 40.5% feature · violin
Cluster 11 46 XP_032218993.2 (NV2.6252) 1.84 2.8 45.9% feature · violin
Cluster 11 47 XP_048589872.1 (NV2.10942) 0.78 2.8 73.0% feature · violin
Cluster 11 48 XP_032228655.1 (NV2.20310) 5.63 2.7 27.0% feature · violin
Cluster 11 49 XP_001639719.1 (NV2.23615) 2.59 2.7 37.8% feature · violin
Cluster 11 50 XP_048583218.1 (NV2.1930) 2.11 2.6 40.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 15 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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