Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.19496 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 19 1 NV2.5358 not mapped 13.10 7.9 100.0% feature · violin
Cluster 19 2 XP_001631794.2 (NV2.10038) 13.30 7.9 100.0% feature · violin
Cluster 19 3 NV2.25851 not mapped 12.69 7.5 95.2% feature · violin
Cluster 19 4 NV2.10281 not mapped 10.56 7.5 95.2% feature · violin
Cluster 19 5 XP_048584536.1 (NV2.25847) 10.74 6.7 85.7% feature · violin
Cluster 19 6 XP_048585754.1 (NV2.19486) 10.01 6.7 85.7% feature · violin
Cluster 19 7 XP_048585753.1 (NV2.19485) 12.27 6.4 81.0% feature · violin
Cluster 19 8 NV2.9156 not mapped 9.09 6.3 81.0% feature · violin
Cluster 19 9 NV2.650 not mapped 12.50 6.0 76.2% feature · violin
Cluster 19 10 NV2.649 not mapped 31.96 5.6 71.4% feature · violin
Cluster 19 11 NV2.10279 not mapped 10.64 5.6 71.4% feature · violin
Cluster 19 12 XP_001638930.3 (NV2.740) 9.09 5.6 71.4% feature · violin
Cluster 19 13 NV2.7716 not mapped 2.60 5.6 90.5% feature · violin
Cluster 19 14 XP_048580776.1 (NV2.14921) 7.43 5.5 71.4% feature · violin
Cluster 19 15 NV2.10282 not mapped 5.53 5.4 71.4% feature · violin
Cluster 19 16 NV2.18292 not mapped 5.81 5.0 66.7% feature · violin
Cluster 19 17 XP_048589136.1 (NV2.2666) 12.41 4.9 61.9% feature · violin
Cluster 19 18 NV2.13562 not mapped 3.37 4.5 71.4% feature · violin
Cluster 19 19 NV2.14919 not mapped 6.97 4.4 57.1% feature · violin
Cluster 19 20 XP_048577583.1 (NV2.8578) 4.43 4.4 61.9% feature · violin
Cluster 19 21 XP_048585751.1 (NV2.19496) 6.21 4.4 57.1% feature · violin
Cluster 19 22 XP_048584945.1 (NV2.17605) 5.86 4.3 57.1% feature · violin
Cluster 19 23 XP_001629285.1 (NV2.23520) 2.19 4.3 90.5% feature · violin
Cluster 19 24 XP_048577184.1 (NV2.4529) 4.03 4.3 61.9% feature · violin
Cluster 19 25 XP_001629910.2 (NV2.15104) 5.13 4.3 57.1% feature · violin
Cluster 19 26 NV2.3425 not mapped 3.86 4.2 61.9% feature · violin
Cluster 19 27 XP_032220786.2 (NV2.14479) 4.16 4.1 57.1% feature · violin
Cluster 19 28 NV2.12439 not mapped 1.88 3.9 90.5% feature · violin
Cluster 19 29 NV2.13030 not mapped 1.29 3.8 100.0% feature · violin
Cluster 19 30 XP_048584535.1 (NV2.17429) 10.25 3.7 47.6% feature · violin
Cluster 19 31 NV2.5899 not mapped 1.16 3.7 90.5% feature · violin
Cluster 19 32 XP_001625494.1 (NV2.23809) 1.78 3.6 76.2% feature · violin
Cluster 19 33 XP_001640448.1 (NV2.7089) 2.70 3.5 57.1% feature · violin
Cluster 19 34 XP_001634593.1 (NV2.1870) 2.29 3.4 61.9% feature · violin
Cluster 19 35 XP_048581053.1 (NV2.15071) 2.16 3.4 66.7% feature · violin
Cluster 19 36 XP_001628734.1 (NV2.6368) 1.94 3.4 71.4% feature · violin
Cluster 19 37 NV2.25852 not mapped 10.76 3.4 42.9% feature · violin
Cluster 19 38 XP_001632163.2 (NV2.5739) 3.05 3.3 52.4% feature · violin
Cluster 19 39 XP_001641455.1 (NV2.12154) 1.25 3.3 90.5% feature · violin
Cluster 19 40 NV2.9204 not mapped 9.25 3.3 42.9% feature · violin
Cluster 19 41 XP_032230358.2 (NV2.10253) 9.30 3.3 42.9% feature · violin
Cluster 19 42 XP_001627013.1 (NV2.4389) 1.55 3.3 76.2% feature · violin
Cluster 19 43 NV2.2748 not mapped 1.78 3.2 71.4% feature · violin
Cluster 19 44 NV2.1355 not mapped 2.60 3.2 52.4% feature · violin
Cluster 19 45 NV2.9450 not mapped 2.01 3.1 66.7% feature · violin
Cluster 19 46 NV2.22692 not mapped 1.23 3.1 85.7% feature · violin
Cluster 19 47 XP_001641534.3 (NV2.12087) 2.29 3.1 90.5% feature · violin
Cluster 19 48 XP_001633226.2 (NV2.16897) 1.89 3.0 61.9% feature · violin
Cluster 19 49 NV2.3190 not mapped 1.75 3.0 71.4% feature · violin
Cluster 19 50 XP_001626598.1 (NV2.10) 1.51 3.0 76.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 23 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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