Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 5163 Cluster 7162 Cluster 1145 Cluster 0134 Cluster 14130 Cluster 16117 Cluster 1899 Cluster 1377 Cluster 466 Cluster 1064 Cluster 2162 Cluster 354 Cluster 845 Cluster 1745 Cluster 942 Cluster 1541 Cluster 1137 Cluster 2232 Cluster 229 Cluster 1921 Cluster 619 Cluster 1219 Cluster 2011
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.23347 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 21 1 NV2.3425 11.41 13.4 100.0% feature · violin
Cluster 21 2 NV2.21610 12.19 13.2 98.4% feature · violin
Cluster 21 3 NV2.6785 10.59 12.7 95.2% feature · violin
Cluster 21 4 NV2.12902 11.25 11.8 88.7% feature · violin
Cluster 21 5 NV2.11564 10.24 11.8 88.7% feature · violin
Cluster 21 6 NV2.12904 9.95 10.9 82.3% feature · violin
Cluster 21 7 NV2.10277 2.24 10.2 98.4% feature · violin
Cluster 21 8 NV2.7431 9.02 10.1 75.8% feature · violin
Cluster 21 9 NV2.20203 1.88 10.0 100.0% feature · violin
Cluster 21 10 NV2.25146 8.56 9.6 72.6% feature · violin
Cluster 21 11 NV2.22761 4.49 9.6 100.0% feature · violin
Cluster 21 12 NV2.22820 10.55 9.0 67.7% feature · violin
Cluster 21 13 NV2.14988 9.28 9.0 67.7% feature · violin
Cluster 21 14 NV2.12087 3.98 9.0 100.0% feature · violin
Cluster 21 15 NV2.12903 9.25 8.8 66.1% feature · violin
Cluster 21 16 NV2.6419 1.61 8.7 100.0% feature · violin
Cluster 21 17 NV2.16121 3.65 8.6 95.2% feature · violin
Cluster 21 18 NV2.13525 11.27 8.2 61.3% feature · violin
Cluster 21 19 NV2.770 8.88 8.1 61.3% feature · violin
Cluster 21 20 NV2.17740 4.30 8.1 67.7% feature · violin
Cluster 21 21 NV2.23463 2.53 8.1 93.5% feature · violin
Cluster 21 22 NV2.18292 6.61 8.0 61.3% feature · violin
Cluster 21 23 NV2.1249 2.18 8.0 93.5% feature · violin
Cluster 21 24 NV2.20054 2.68 7.9 98.4% feature · violin
Cluster 21 25 NV2.10185 3.94 7.9 67.7% feature · violin
Cluster 21 26 NV2.15977 1.74 7.7 88.7% feature · violin
Cluster 21 27 NV2.14699 9.48 7.3 54.8% feature · violin
Cluster 21 28 NV2.25450 1.91 7.2 85.5% feature · violin
Cluster 21 29 NV2.13562 3.42 7.2 66.1% feature · violin
Cluster 21 30 NV2.23520 2.14 7.2 85.5% feature · violin
Cluster 21 31 NV2.4812 2.76 7.1 75.8% feature · violin
Cluster 21 32 NV2.20404 1.83 7.1 98.4% feature · violin
Cluster 21 33 NV2.18064 3.46 7.0 62.9% feature · violin
Cluster 21 34 NV2.1870 3.45 7.0 62.9% feature · violin
Cluster 21 35 NV2.13531 1.58 6.9 93.5% feature · violin
Cluster 21 36 NV2.23347 2.95 6.8 67.7% feature · violin
Cluster 21 37 NV2.19585 3.56 6.7 61.3% feature · violin
Cluster 21 38 NV2.5899 1.42 6.7 95.2% feature · violin
Cluster 21 39 NV2.21473 8.30 6.7 50.0% feature · violin
Cluster 21 40 NV2.800 8.03 6.6 50.0% feature · violin
Cluster 21 41 NV2.9784 1.86 6.6 83.9% feature · violin
Cluster 21 42 NV2.5209 4.47 6.4 51.6% feature · violin
Cluster 21 43 NV2.3298 2.53 6.2 69.4% feature · violin
Cluster 21 44 NV2.16462 2.38 6.0 66.1% feature · violin
Cluster 21 45 NV2.4658 6.61 5.9 45.2% feature · violin
Cluster 21 46 NV2.3804 1.97 5.9 71.0% feature · violin
Cluster 21 47 NV2.15071 2.23 5.9 67.7% feature · violin
Cluster 21 48 NV2.12028 1.36 5.9 87.1% feature · violin
Cluster 21 49 NV2.3190 2.00 5.9 72.6% feature · violin
Cluster 21 50 NV2.16637 4.78 5.8 46.8% feature · violin
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