Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.23635 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 17 1 NV2.3583 not mapped 8.87 9.6 84.4% feature · violin
Cluster 17 2 NV2.9754 not mapped 9.23 8.9 77.8% feature · violin
Cluster 17 3 XP_001628339.1 (NV2.6591) 3.97 8.2 95.6% feature · violin
Cluster 17 4 NV2.13196 not mapped 3.79 8.2 100.0% feature · violin
Cluster 17 5 NV2.17881 not mapped 3.96 8.1 84.4% feature · violin
Cluster 17 6 NV2.18706 not mapped 3.60 7.9 88.9% feature · violin
Cluster 17 7 XP_032221021.1 (NV2.9986) 9.11 7.9 68.9% feature · violin
Cluster 17 8 XP_048576268.1 (NV2.7355) 4.67 7.9 77.8% feature · violin
Cluster 17 9 XP_048581940.1 (NV2.16270) 4.62 7.8 75.6% feature · violin
Cluster 17 10 XP_001637222.2 (NV2.416) 3.47 7.6 84.4% feature · violin
Cluster 17 11 XP_048578732.1 (NV2.10453) 3.83 7.4 75.6% feature · violin
Cluster 17 12 XP_032234269.2 (NV2.22666) 3.82 7.4 80.0% feature · violin
Cluster 17 13 XP_048581955.1 (NV2.16273) 3.97 7.1 73.3% feature · violin
Cluster 17 14 XP_001636029.2 (NV2.1436) 4.40 6.8 66.7% feature · violin
Cluster 17 15 XP_001638653.3 (NV2.14566) 3.83 6.8 80.0% feature · violin
Cluster 17 16 XP_001638052.2 (NV2.4645) 3.69 6.8 71.1% feature · violin
Cluster 17 17 XP_048586084.1 (NV2.20180) 3.31 6.8 77.8% feature · violin
Cluster 17 18 NV2.8267 not mapped 3.25 6.8 77.8% feature · violin
Cluster 17 19 NV2.9309 not mapped 3.54 6.8 71.1% feature · violin
Cluster 17 20 XP_048584379.1 (NV2.1783) 3.33 6.6 75.6% feature · violin
Cluster 17 21 XP_048588121.1 (NV2.22471) 3.71 6.5 66.7% feature · violin
Cluster 17 22 XP_048584705.1 (NV2.18708) 3.12 6.3 71.1% feature · violin
Cluster 17 23 NV2.801 not mapped 2.76 6.2 73.3% feature · violin
Cluster 17 24 XP_032221774.2 (NV2.20475) 3.04 6.2 80.0% feature · violin
Cluster 17 25 XP_001639289.1 (NV2.25163) 1.96 6.1 86.7% feature · violin
Cluster 17 26 NV2.6478 not mapped 3.79 6.0 60.0% feature · violin
Cluster 17 27 NV2.7404 not mapped 4.16 5.7 55.6% feature · violin
Cluster 17 28 XP_032233121.2 (NV2.7407) 4.33 5.7 55.6% feature · violin
Cluster 17 29 XP_032220007.1 (NV2.2916) 3.53 5.6 57.8% feature · violin
Cluster 17 30 NV2.833 not mapped 2.76 5.6 66.7% feature · violin
Cluster 17 31 XP_032237143.1 (NV2.19504) 2.46 5.5 71.1% feature · violin
Cluster 17 32 NV2.25931 not mapped 1.57 5.5 97.8% feature · violin
Cluster 17 33 NV2.24844 not mapped 3.98 5.3 53.3% feature · violin
Cluster 17 34 XP_032219916.2 (NV2.2978) 3.69 5.2 53.3% feature · violin
Cluster 17 35 XP_032234487.2 (NV2.7912) 2.58 5.1 62.2% feature · violin
Cluster 17 36 NV2.3584 not mapped 8.22 5.1 44.4% feature · violin
Cluster 17 37 XP_048590339.1 (NV2.6432) 2.68 5.0 62.2% feature · violin
Cluster 17 38 XP_001637925.1 (NV2.11221) 4.04 5.0 48.9% feature · violin
Cluster 17 39 XP_048584316.1 (NV2.453) 3.03 5.0 53.3% feature · violin
Cluster 17 40 XP_001637624.1 (NV2.23347) 2.69 5.0 60.0% feature · violin
Cluster 17 41 XP_032232160.2 (NV2.1782) 3.21 5.0 53.3% feature · violin
Cluster 17 42 NV2.843 not mapped 3.88 5.0 48.9% feature · violin
Cluster 17 43 XP_032226201.1 (NV2.23635) 2.92 4.9 53.3% feature · violin
Cluster 17 44 XP_032226385.2 (NV2.17087) 4.32 4.9 46.7% feature · violin
Cluster 17 45 NV2.2154 not mapped 2.73 4.9 60.0% feature · violin
Cluster 17 46 XP_032235653.2 (NV2.2809) 3.21 4.9 51.1% feature · violin
Cluster 17 47 XP_048584540.1 (NV2.17430) 2.01 4.8 73.3% feature · violin
Cluster 17 48 NV2.8570 not mapped 2.30 4.8 95.6% feature · violin
Cluster 17 49 XP_032222662.2 (NV2.17938) 2.43 4.8 57.8% feature · violin
Cluster 17 50 XP_048588501.1 (NV2.25898) 3.78 4.7 46.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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