Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.24576 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 22 1 XP_032231249.2 (NV2.6859) 4.32 7.9 93.8% feature · violin
Cluster 22 2 XP_001638352.1 (NV2.6253) 4.78 7.2 81.2% feature · violin
Cluster 22 3 XP_048577374.1 (NV2.8853) 7.24 6.9 71.9% feature · violin
Cluster 22 4 NV2.24072 not mapped 6.75 5.9 62.5% feature · violin
Cluster 22 5 XP_048576813.1 (NV2.4252) 4.68 5.8 65.6% feature · violin
Cluster 22 6 XP_001633812.2 (NV2.3189) 2.55 5.8 90.6% feature · violin
Cluster 22 7 XP_032219264.1 (NV2.14538) 2.17 5.7 96.9% feature · violin
Cluster 22 8 XP_032237477.1 (NV2.3891) 2.72 5.7 100.0% feature · violin
Cluster 22 9 XP_001635734.2 (NV2.9785) 5.76 5.5 59.4% feature · violin
Cluster 22 10 XP_032218810.2 (NV2.10664) 6.93 5.4 56.2% feature · violin
Cluster 22 11 NV2.24576 not mapped 1.49 5.3 100.0% feature · violin
Cluster 22 12 XP_048590162.1 (NV2.6816) 6.14 5.3 56.2% feature · violin
Cluster 22 13 NV2.17090 not mapped 7.11 5.1 53.1% feature · violin
Cluster 22 14 XP_001635788.3 (NV2.9848) 5.26 4.9 53.1% feature · violin
Cluster 22 15 NV2.18471 not mapped 2.05 4.7 84.4% feature · violin
Cluster 22 16 XP_001633323.2 (NV2.20205) 1.53 4.6 100.0% feature · violin
Cluster 22 17 XP_048576278.1 (NV2.7884) 2.10 4.6 78.1% feature · violin
Cluster 22 18 XP_032242894.2 (NV2.13142) 2.86 4.5 62.5% feature · violin
Cluster 22 19 XP_001628947.3 (NV2.18331) 7.13 4.5 46.9% feature · violin
Cluster 22 20 XP_032236866.1 (NV2.22508) 2.03 4.4 96.9% feature · violin
Cluster 22 21 NV2.2651 not mapped 5.69 4.4 46.9% feature · violin
Cluster 22 22 XP_048588532.1 (NV2.22478) 2.10 4.3 71.9% feature · violin
Cluster 22 23 XP_001623699.3 (NV2.19467) 6.33 4.1 43.8% feature · violin
Cluster 22 24 XP_001636645.1 (NV2.15996) 2.37 4.1 65.6% feature · violin
Cluster 22 25 XP_032237683.2 (NV2.21572) 6.10 4.1 43.8% feature · violin
Cluster 22 26 NV2.3755 not mapped 1.67 4.0 78.1% feature · violin
Cluster 22 27 XP_001628193.3 (NV2.17034) 2.11 3.9 62.5% feature · violin
Cluster 22 28 XP_001632838.2 (NV2.2703) 3.91 3.9 46.9% feature · violin
Cluster 22 29 XP_032222519.2 (NV2.17865) 1.73 3.9 96.9% feature · violin
Cluster 22 30 XP_032232859.1 (NV2.4228) 8.09 3.9 40.6% feature · violin
Cluster 22 31 XP_048589643.1 (NV2.3816) 6.98 3.9 40.6% feature · violin
Cluster 22 32 XP_048588429.1 (NV2.1724) 1.33 3.8 93.8% feature · violin
Cluster 22 33 XP_048576854.1 (NV2.4075) 3.54 3.8 46.9% feature · violin
Cluster 22 34 XP_001630130.1 (NV2.7878) 2.66 3.8 56.2% feature · violin
Cluster 22 35 XP_032227716.2 (NV2.8621) 2.32 3.8 56.2% feature · violin
Cluster 22 36 XP_001629890.2 (NV2.15083) 5.19 3.7 40.6% feature · violin
Cluster 22 37 XP_032233122.2 (NV2.7410) 1.51 3.7 84.4% feature · violin
Cluster 22 38 XP_001627495.1 (NV2.21461) 1.60 3.6 81.2% feature · violin
Cluster 22 39 NV2.20546 not mapped 2.68 3.6 50.0% feature · violin
Cluster 22 40 NV2.10666 not mapped 7.25 3.6 37.5% feature · violin
Cluster 22 41 NV2.21644 not mapped 1.91 3.6 71.9% feature · violin
Cluster 22 42 XP_001640876.1 (NV2.18884) 2.17 3.5 53.1% feature · violin
Cluster 22 43 XP_032240671.2 (NV2.19039) 3.81 3.5 40.6% feature · violin
Cluster 22 44 XP_001638604.2 (NV2.14601) 2.01 3.5 59.4% feature · violin
Cluster 22 45 XP_048576733.1 (NV2.4921) 3.69 3.5 40.6% feature · violin
Cluster 22 46 XP_048589122.1 (NV2.3652) 5.00 3.5 37.5% feature · violin
Cluster 22 47 NV2.8891 not mapped 1.37 3.4 93.8% feature · violin
Cluster 22 48 XP_048587964.1 (NV2.20680) 3.82 3.4 40.6% feature · violin
Cluster 22 49 XP_001633435.2 (NV2.17004) 1.35 3.4 75.0% feature · violin
Cluster 22 50 XP_001627254.1 (NV2.15043) 1.29 3.3 78.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 10 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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