Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.5234 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 XP_048584605.1 (NV2.18817) 14.04 10.9 100.0% feature · violin
Cluster 15 2 XP_001633083.2 (NV2.13683) 13.46 10.9 100.0% feature · violin
Cluster 15 3 NV2.11802 not mapped 11.85 10.9 100.0% feature · violin
Cluster 15 4 XP_032218917.1 (NV2.10686) 9.33 10.6 100.0% feature · violin
Cluster 15 5 NV2.11721 not mapped 8.80 10.3 97.6% feature · violin
Cluster 15 6 XP_032222353.2 (NV2.11821) 7.90 10.0 95.1% feature · violin
Cluster 15 7 XP_032220171.1 (NV2.5200) 7.45 10.0 95.1% feature · violin
Cluster 15 8 NV2.10115 not mapped 11.04 9.9 90.2% feature · violin
Cluster 15 9 NV2.11816 not mapped 10.98 9.8 90.2% feature · violin
Cluster 15 10 XP_001641112.2 (NV2.11720) 7.43 9.8 92.7% feature · violin
Cluster 15 11 XP_001641982.2 (NV2.16293) 11.84 9.6 87.8% feature · violin
Cluster 15 12 NV2.4072 not mapped 5.55 9.5 95.1% feature · violin
Cluster 15 13 XP_032233826.2 (NV2.12690) 6.73 9.3 87.8% feature · violin
Cluster 15 14 NV2.11819 not mapped 10.73 9.1 82.9% feature · violin
Cluster 15 15 XP_048580143.1 (NV2.12689) 10.12 9.1 82.9% feature · violin
Cluster 15 16 XP_032222173.2 (NV2.11723) 7.10 8.9 85.4% feature · violin
Cluster 15 17 NV2.1062 not mapped 2.09 8.6 100.0% feature · violin
Cluster 15 18 XP_048581718.1 (NV2.14012) 11.62 8.5 78.0% feature · violin
Cluster 15 19 NV2.1063 not mapped 2.34 8.3 95.1% feature · violin
Cluster 15 20 NV2.1066 not mapped 2.43 8.2 95.1% feature · violin
Cluster 15 21 XP_001626713.1 (NV2.23669) 2.87 7.9 95.1% feature · violin
Cluster 15 22 NV2.996 not mapped 7.80 7.7 70.7% feature · violin
Cluster 15 23 NV2.1851 not mapped 5.77 7.6 73.2% feature · violin
Cluster 15 24 XP_001641667.2 (NV2.3272) 4.95 7.5 75.6% feature · violin
Cluster 15 25 NV2.16336 not mapped 11.19 7.5 68.3% feature · violin
Cluster 15 26 XP_001641269.1 (NV2.4070) 2.83 7.5 87.8% feature · violin
Cluster 15 27 NV2.363 not mapped 8.20 7.4 68.3% feature · violin
Cluster 15 28 XP_048580560.1 (NV2.15283) 5.87 7.3 70.7% feature · violin
Cluster 15 29 NV2.23597 not mapped 3.64 7.2 78.0% feature · violin
Cluster 15 30 XP_001632860.1 (NV2.2652) 4.93 7.2 70.7% feature · violin
Cluster 15 31 XP_032220781.2 (NV2.14459) 4.74 7.1 70.7% feature · violin
Cluster 15 32 XP_001641179.2 (NV2.17877) 5.55 7.1 68.3% feature · violin
Cluster 15 33 NV2.23627 not mapped 5.98 7.0 65.9% feature · violin
Cluster 15 34 XP_001621969.1 (NV2.5111) 4.83 6.9 68.3% feature · violin
Cluster 15 35 XP_048584685.1 (NV2.17394) 5.34 6.9 65.9% feature · violin
Cluster 15 36 NV2.8891 not mapped 2.17 6.7 92.7% feature · violin
Cluster 15 37 XP_048577371.1 (NV2.8421) 4.86 6.7 65.9% feature · violin
Cluster 15 38 XP_048579868.1 (NV2.11820) 9.28 6.6 61.0% feature · violin
Cluster 15 39 XP_048576792.1 (NV2.5234) 8.91 6.4 58.5% feature · violin
Cluster 15 40 XP_032238867.2 (NV2.9534) 4.63 6.3 63.4% feature · violin
Cluster 15 41 XP_032226751.1 (NV2.3062) 7.32 6.3 58.5% feature · violin
Cluster 15 42 XP_001635203.1 (NV2.18211) 3.35 6.3 70.7% feature · violin
Cluster 15 43 XP_001626714.2 (NV2.23668) 5.01 6.2 61.0% feature · violin
Cluster 15 44 XP_048588158.1 (NV2.22296) 11.67 6.1 56.1% feature · violin
Cluster 15 45 NV2.6028 not mapped 4.22 6.1 63.4% feature · violin
Cluster 15 46 XP_048577496.1 (NV2.8258) 9.09 6.1 56.1% feature · violin
Cluster 15 47 XP_032221913.2 (NV2.18954) 5.27 6.1 58.5% feature · violin
Cluster 15 48 XP_048582038.1 (NV2.15546) 5.01 6.0 58.5% feature · violin
Cluster 15 49 XP_001640176.1 (NV2.949) 5.71 5.9 56.1% feature · violin
Cluster 15 50 XP_048576925.1 (NV2.11818) 10.13 5.8 53.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 17 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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