Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Cluster 5163 Cluster 7162 Cluster 1145 Cluster 0134 Cluster 14130 Cluster 16117 Cluster 1899 Cluster 1377 Cluster 466 Cluster 1064 Cluster 2162 Cluster 354 Cluster 845 Cluster 1745 Cluster 942 Cluster 1541 Cluster 1137 Cluster 2232 Cluster 229 Cluster 1921 Cluster 619 Cluster 1219 Cluster 2011
This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.5358 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 19 1 NV2.5358 13.10 7.9 100.0% feature · violin
Cluster 19 2 NV2.10038 13.30 7.9 100.0% feature · violin
Cluster 19 3 NV2.25851 12.69 7.5 95.2% feature · violin
Cluster 19 4 NV2.10281 10.56 7.5 95.2% feature · violin
Cluster 19 5 NV2.25847 10.74 6.7 85.7% feature · violin
Cluster 19 6 NV2.19486 10.01 6.7 85.7% feature · violin
Cluster 19 7 NV2.19485 12.27 6.4 81.0% feature · violin
Cluster 19 8 NV2.9156 9.09 6.3 81.0% feature · violin
Cluster 19 9 NV2.650 12.50 6.0 76.2% feature · violin
Cluster 19 10 NV2.649 31.96 5.6 71.4% feature · violin
Cluster 19 11 NV2.10279 10.64 5.6 71.4% feature · violin
Cluster 19 12 NV2.740 9.09 5.6 71.4% feature · violin
Cluster 19 13 NV2.7716 2.60 5.6 90.5% feature · violin
Cluster 19 14 NV2.14921 7.43 5.5 71.4% feature · violin
Cluster 19 15 NV2.10282 5.53 5.4 71.4% feature · violin
Cluster 19 16 NV2.18292 5.81 5.0 66.7% feature · violin
Cluster 19 17 NV2.2666 12.41 4.9 61.9% feature · violin
Cluster 19 18 NV2.13562 3.37 4.5 71.4% feature · violin
Cluster 19 19 NV2.14919 6.97 4.4 57.1% feature · violin
Cluster 19 20 NV2.8578 4.43 4.4 61.9% feature · violin
Cluster 19 21 NV2.19496 6.21 4.4 57.1% feature · violin
Cluster 19 22 NV2.17605 5.86 4.3 57.1% feature · violin
Cluster 19 23 NV2.23520 2.19 4.3 90.5% feature · violin
Cluster 19 24 NV2.4529 4.03 4.3 61.9% feature · violin
Cluster 19 25 NV2.15104 5.13 4.3 57.1% feature · violin
Cluster 19 26 NV2.3425 3.86 4.2 61.9% feature · violin
Cluster 19 27 NV2.14479 4.16 4.1 57.1% feature · violin
Cluster 19 28 NV2.12439 1.88 3.9 90.5% feature · violin
Cluster 19 29 NV2.13030 1.29 3.8 100.0% feature · violin
Cluster 19 30 NV2.17429 10.25 3.7 47.6% feature · violin
Cluster 19 31 NV2.5899 1.16 3.7 90.5% feature · violin
Cluster 19 32 NV2.23809 1.78 3.6 76.2% feature · violin
Cluster 19 33 NV2.7089 2.70 3.5 57.1% feature · violin
Cluster 19 34 NV2.1870 2.29 3.4 61.9% feature · violin
Cluster 19 35 NV2.15071 2.16 3.4 66.7% feature · violin
Cluster 19 36 NV2.6368 1.94 3.4 71.4% feature · violin
Cluster 19 37 NV2.25852 10.76 3.4 42.9% feature · violin
Cluster 19 38 NV2.5739 3.05 3.3 52.4% feature · violin
Cluster 19 39 NV2.12154 1.25 3.3 90.5% feature · violin
Cluster 19 40 NV2.9204 9.25 3.3 42.9% feature · violin
Cluster 19 41 NV2.10253 9.30 3.3 42.9% feature · violin
Cluster 19 42 NV2.4389 1.55 3.3 76.2% feature · violin
Cluster 19 43 NV2.2748 1.78 3.2 71.4% feature · violin
Cluster 19 44 NV2.1355 2.60 3.2 52.4% feature · violin
Cluster 19 45 NV2.9450 2.01 3.1 66.7% feature · violin
Cluster 19 46 NV2.22692 1.23 3.1 85.7% feature · violin
Cluster 19 47 NV2.12087 2.29 3.1 90.5% feature · violin
Cluster 19 48 NV2.16897 1.89 3.0 61.9% feature · violin
Cluster 19 49 NV2.3190 1.75 3.0 71.4% feature · violin
Cluster 19 50 NV2.10 1.51 3.0 76.2% feature · violin
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