Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Neural 13348 Secretory2054 Gastrodermis1760 Progenitor904 Epidermis780 Neural 2723 Neural 4486 Secretory - Mucous cells447 Neural 3351 Undetermined319 Developing cnidocytes300 Neural 0153 Muscle117

Showing the cell type that LOC116603461 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Undetermined 1 XP_048584945.1 (LOC5514578) 5.05 16.8 72.1% feature · violin
Undetermined 2 XP_001624532.3 (LOC5503456) 5.18 12.8 46.1% feature · violin
Undetermined 3 LOC125561347 not mapped 4.73 9.7 34.5% feature · violin
Undetermined 4 XP_001628893.2 (LOC5508303) 1.09 8.8 76.5% feature · violin
Undetermined 5 XP_048588227.1 (LOC5498588) 3.35 8.2 40.4% feature · violin
Undetermined 6 XP_048576991.1 (LOC5506296) 3.67 7.7 31.7% feature · violin
Undetermined 7 XP_032238181.2 (LOC116618524) 3.60 7.7 32.9% feature · violin
Undetermined 8 LOC116617252 not mapped 3.88 7.6 29.2% feature · violin
Undetermined 9 XP_032240782.1 (LOC116619761) 4.03 7.6 28.5% feature · violin
Undetermined 10 LOC116610607 not mapped 3.83 7.2 26.6% feature · violin
Undetermined 11 XP_032220593.2 (LOC116603474) 4.07 6.7 25.1% feature · violin
Undetermined 12 XP_032238029.2 (LOC5512771) 2.62 6.7 29.5% feature · violin
Undetermined 13 XP_032237587.2 (LOC116618221) 4.15 6.6 25.1% feature · violin
Undetermined 14 XP_001628339.1 (LOC5507707) 1.27 6.3 57.7% feature · violin
Undetermined 15 XP_001627007.1 (LOC5506295) 3.86 6.1 23.5% feature · violin
Undetermined 16 XP_048577861.1 (LOC116616842) 4.98 5.6 19.4% feature · violin
Undetermined 17 XP_032220568.2 (LOC116603464) 4.48 5.4 19.1% feature · violin
Undetermined 18 XP_048584898.1 (LOC116615610) 4.25 5.2 18.8% feature · violin
Undetermined 19 XP_032237689.1 (LOC116618278) 4.40 5.1 18.2% feature · violin
Undetermined 20 XP_048577263.1 (LOC125559732) 5.15 5.1 17.6% feature · violin
Undetermined 21 XP_001640903.2 (LOC5521019) 0.70 5.1 73.4% feature · violin
Undetermined 22 XP_032227339.2 (LOC116610712) 2.95 5.0 21.3% feature · violin
Undetermined 23 XP_048589225.1 (LOC5509506) 3.39 4.6 18.2% feature · violin
Undetermined 24 XP_001636474.1 (LOC5516468) 0.83 4.3 45.8% feature · violin
Undetermined 25 XP_001640172.3 (LOC5520421) 0.45 4.3 78.1% feature · violin
Undetermined 26 XP_001642071.2 (LOC5522316) 0.95 4.2 36.7% feature · violin
Undetermined 27 XP_032220566.2 (LOC116603461) 4.34 4.1 14.4% feature · violin
Undetermined 28 XP_048586224.1 (LOC5520832) 2.84 4.1 16.3% feature · violin
Undetermined 29 XP_001626821.3 (LOC5506090) 3.33 4.1 16.0% feature · violin
Undetermined 30 XP_001630598.2 (LOC5510098) 0.47 4.0 82.8% feature · violin
Undetermined 31 XP_001629744.1 (LOC5509200) 0.67 4.0 48.0% feature · violin
Undetermined 32 XP_032237708.1 (LOC116618293) 4.39 3.8 13.5% feature · violin
Undetermined 33 XP_001633323.2 (LOC5512977) 0.52 3.8 80.6% feature · violin
Undetermined 34 XP_001633985.2 (LOC5513711) 1.98 3.6 17.9% feature · violin
Undetermined 35 XP_032237477.1 (LOC5512197) 0.69 3.6 52.0% feature · violin
Undetermined 36 XP_032235860.1 (LOC116617332) 4.23 3.6 12.9% feature · violin
Undetermined 37 XP_048586828.1 (LOC5508413) 3.09 3.5 14.4% feature · violin
Undetermined 38 XP_001637641.2 (LOC5517702) 0.54 3.4 59.6% feature · violin
Undetermined 39 XP_032223550.2 (LOC116604784) 4.90 3.4 11.9% feature · violin
Undetermined 40 XP_048576540.1 (LOC5501235) 4.24 3.4 12.5% feature · violin
Undetermined 41 XP_048589666.1 (LOC5497678) 2.52 3.4 15.4% feature · violin
Undetermined 42 XP_001628981.2 (LOC5508412) 4.79 3.4 11.6% feature · violin
Undetermined 43 XP_048582549.1 (LOC125561878) 4.11 3.3 11.9% feature · violin
Undetermined 44 LOC116619217 not mapped 2.19 3.3 16.6% feature · violin
Undetermined 45 XP_048575382.1 (LOC125557117) 4.54 3.3 11.6% feature · violin
Undetermined 46 XP_032238297.1 (LOC5512882) 1.42 3.3 19.7% feature · violin
Undetermined 47 XP_032241068.2 (LOC5515558) 2.45 3.3 13.8% feature · violin
Undetermined 48 XP_048576419.1 (LOC116614724) 4.84 3.3 11.3% feature · violin
Undetermined 49 XP_032226344.1 (LOC5502173) 2.17 3.2 14.4% feature · violin
Undetermined 50 XP_032239608.1 (LOC5514177) 0.41 3.2 72.4% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 4 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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