Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Neural 13348 Secretory2054 Gastrodermis1760 Progenitor904 Epidermis780 Neural 2723 Neural 4486 Secretory - Mucous cells447 Neural 3351 Undetermined319 Developing cnidocytes300 Neural 0153 Muscle117

Showing the cell type that LOC116616978 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Developing cnidocytes 1 XP_048586136.1 (LOC5497944) 6.50 29.1 100.0% feature · violin
Developing cnidocytes 2 XP_032233466.1 (LOC5508757) 6.40 28.0 98.3% feature · violin
Developing cnidocytes 3 XP_048576923.1 (LOC5521154) 6.54 27.6 100.0% feature · violin
Developing cnidocytes 4 XP_032220171.1 (LOC5519515) 5.82 27.5 97.0% feature · violin
Developing cnidocytes 5 XP_001641112.2 (LOC5521194) 5.70 27.2 98.7% feature · violin
Developing cnidocytes 6 XP_032240483.2 (LOC116619635) 5.55 27.0 95.3% feature · violin
Developing cnidocytes 7 XP_032219593.2 (LOC116602314) 5.86 26.9 94.7% feature · violin
Developing cnidocytes 8 XP_032233464.1 (LOC116615704) 5.98 26.8 94.7% feature · violin
Developing cnidocytes 9 XP_032238867.2 (LOC116618849) 5.69 26.6 93.7% feature · violin
Developing cnidocytes 10 XP_048590274.1 (LOC5501396) 5.41 26.6 94.3% feature · violin
Developing cnidocytes 11 XP_032218917.1 (LOC116602010) 5.80 25.6 93.7% feature · violin
Developing cnidocytes 12 XP_048590529.1 (LOC116616978) 5.14 25.5 92.3% feature · violin
Developing cnidocytes 13 XP_032220173.1 (LOC5519454) 5.64 25.5 91.7% feature · violin
Developing cnidocytes 14 XP_048578999.1 (LOC5512442) 5.79 25.5 90.3% feature · violin
Developing cnidocytes 15 XP_048578523.1 (LOC116617360) 5.58 25.4 94.0% feature · violin
Developing cnidocytes 16 XP_032226109.2 (LOC5501947) 5.64 25.4 90.3% feature · violin
Developing cnidocytes 17 XP_032239923.1 (LOC5514387) 5.37 25.1 90.3% feature · violin
Developing cnidocytes 18 XP_032229998.1 (LOC5505758) 5.32 25.0 90.7% feature · violin
Developing cnidocytes 19 LOC116617762 not mapped 5.46 24.9 89.7% feature · violin
Developing cnidocytes 20 XP_032233826.2 (LOC116616092) 5.76 24.8 87.3% feature · violin
Developing cnidocytes 21 XP_032222174.2 (LOC116604246) 5.53 24.8 95.0% feature · violin
Developing cnidocytes 22 XP_001638827.2 (LOC5518902) 5.55 24.6 91.0% feature · violin
Developing cnidocytes 23 XP_032221948.2 (LOC5520919) 5.31 24.1 86.3% feature · violin
Developing cnidocytes 24 XP_032237784.2 (LOC116618347) 5.08 23.9 90.3% feature · violin
Developing cnidocytes 25 XP_032219274.2 (LOC5518731) 5.36 23.4 83.7% feature · violin
Developing cnidocytes 26 XP_048581717.1 (LOC116617656) 5.61 23.4 82.7% feature · violin
Developing cnidocytes 27 XP_032229657.2 (LOC116613146) 5.30 23.3 87.7% feature · violin
Developing cnidocytes 28 XP_032232867.1 (LOC5508165) 5.54 23.2 82.7% feature · violin
Developing cnidocytes 29 XP_048589461.1 (LOC5506819) 5.83 23.1 82.0% feature · violin
Developing cnidocytes 30 XP_048584610.1 (LOC5511504) 5.23 23.0 83.3% feature · violin
Developing cnidocytes 31 XP_001641951.2 (LOC5522324) 5.33 23.0 82.0% feature · violin
Developing cnidocytes 32 XP_001633397.2 (LOC5513113) 5.19 22.5 81.0% feature · violin
Developing cnidocytes 33 XP_032235903.2 (LOC5510810) 5.35 22.2 81.0% feature · violin
Developing cnidocytes 34 LOC116609472 not mapped 5.31 22.2 79.0% feature · violin
Developing cnidocytes 35 XP_048578694.1 (LOC116617362) 5.56 21.8 77.7% feature · violin
Developing cnidocytes 36 XP_001628965.2 (LOC5508357) 4.79 21.8 85.7% feature · violin
Developing cnidocytes 37 XP_048576925.1 (LOC5521152) 5.97 21.8 77.7% feature · violin
Developing cnidocytes 38 XP_048578315.1 (LOC116609466) 5.22 21.6 79.0% feature · violin
Developing cnidocytes 39 XP_048581163.1 (LOC125561268) 5.29 21.4 77.7% feature · violin
Developing cnidocytes 40 XP_032238895.1 (LOC116618868) 5.40 21.3 76.0% feature · violin
Developing cnidocytes 41 XP_048587441.1 (LOC116607198) 5.52 21.2 75.3% feature · violin
Developing cnidocytes 42 XP_032231552.1 (LOC5525262) 5.52 21.2 75.0% feature · violin
Developing cnidocytes 43 XP_001640163.1 (LOC5520334) 5.26 21.2 76.0% feature · violin
Developing cnidocytes 44 XP_032222353.2 (LOC116604289) 5.37 21.0 75.7% feature · violin
Developing cnidocytes 45 XP_001632800.2 (LOC5512467) 5.24 20.9 76.0% feature · violin
Developing cnidocytes 46 XP_048587703.1 (LOC116610670) 5.97 20.6 72.0% feature · violin
Developing cnidocytes 47 XP_001639457.2 (LOC5519580) 5.17 20.6 74.7% feature · violin
Developing cnidocytes 48 XP_032226790.2 (LOC5502614) 5.52 20.4 73.3% feature · violin
Developing cnidocytes 49 XP_032221913.2 (LOC5521084) 5.16 20.4 75.3% feature · violin
Developing cnidocytes 50 XP_048578888.1 (LOC5515676) 5.26 20.4 72.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 2 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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