Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Neural 13348 Secretory2054 Gastrodermis1760 Progenitor904 Epidermis780 Neural 2723 Neural 4486 Secretory - Mucous cells447 Neural 3351 Undetermined319 Developing cnidocytes300 Neural 0153 Muscle117

Showing the cell type that LOC116620183 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Secretory 1 XP_048577482.1 (LOC116614950) 3.17 31.3 59.2% feature · violin
Secretory 2 XP_001623803.3 (LOC5502645) 3.37 31.2 55.8% feature · violin
Secretory 3 XP_048581747.1 (LOC5513629) 2.58 23.5 55.3% feature · violin
Secretory 4 XP_001626824.3 (LOC5506082) 2.54 23.2 54.7% feature · violin
Secretory 5 XP_001639266.2 (LOC5519323) 2.57 22.9 55.7% feature · violin
Secretory 6 LOC116614635 not mapped 3.07 22.4 42.6% feature · violin
Secretory 7 XP_032241744.1 (LOC116620183) 3.08 21.5 38.2% feature · violin
Secretory 8 XP_048587563.1 (LOC5506156) 2.79 21.4 44.6% feature · violin
Secretory 9 XP_032238316.2 (LOC5512887) 2.76 21.2 42.8% feature · violin
Secretory 10 XP_001631973.2 (LOC5511530) 3.01 20.9 38.9% feature · violin
Secretory 11 XP_048582266.1 (LOC116618556) 2.67 20.7 46.4% feature · violin
Secretory 12 XP_032241950.1 (LOC116620296) 2.59 19.9 40.7% feature · violin
Secretory 13 XP_048581666.1 (LOC5503926) 2.94 19.6 36.8% feature · violin
Secretory 14 XP_032240161.2 (LOC5514649) 3.18 19.5 35.4% feature · violin
Secretory 15 XP_032221960.2 (LOC5521015) 2.06 19.2 55.1% feature · violin
Secretory 16 XP_048577985.1 (LOC5518796) 2.83 19.1 37.1% feature · violin
Secretory 17 XP_001632947.3 (LOC5512616) 2.35 17.9 44.6% feature · violin
Secretory 18 XP_032219717.1 (LOC5519024) 2.86 17.8 34.5% feature · violin
Secretory 19 XP_032235282.1 (LOC5510262) 2.16 17.7 52.5% feature · violin
Secretory 20 XP_032240750.1 (LOC5515186) 3.14 17.6 30.8% feature · violin
Secretory 21 XP_001625511.1 (LOC5504607) 2.90 17.3 32.1% feature · violin
Secretory 22 XP_032217785.1 (LOC116601181) 3.07 17.0 30.5% feature · violin
Secretory 23 XP_001636270.3 (LOC5516191) 2.74 16.9 32.8% feature · violin
Secretory 24 XP_001628822.3 (LOC5508237) 2.79 16.9 30.4% feature · violin
Secretory 25 XP_048580244.1 (LOC5520496) 3.09 16.8 29.9% feature · violin
Secretory 26 XP_032218073.1 (LOC116601415) 2.77 16.6 33.5% feature · violin
Secretory 27 XP_001628893.2 (LOC5508303) 0.86 16.6 73.1% feature · violin
Secretory 28 XP_032226219.1 (LOC116609535) 3.20 16.2 28.0% feature · violin
Secretory 29 XP_001631457.1 (LOC5511034) 3.10 15.6 27.5% feature · violin
Secretory 30 XP_048590209.1 (LOC5517430) 2.83 15.4 28.9% feature · violin
Secretory 31 XP_001624097.3 (LOC5502974) 3.10 15.3 27.2% feature · violin
Secretory 32 XP_048584442.1 (LOC5515051) 2.75 15.0 29.0% feature · violin
Secretory 33 XP_001623008.2 (LOC5501743) 2.66 14.9 30.8% feature · violin
Secretory 34 XP_001625522.3 (LOC5504606) 3.16 14.5 24.6% feature · violin
Secretory 35 XP_048585639.1 (LOC5519093) 2.84 14.4 25.9% feature · violin
Secretory 36 XP_048580962.1 (LOC5519957) 3.32 14.4 23.5% feature · violin
Secretory 37 XP_001622606.2 (LOC5501292) 3.40 14.2 23.5% feature · violin
Secretory 38 XP_032219473.1 (LOC116602254) 1.35 13.8 45.4% feature · violin
Secretory 39 XP_032232369.2 (LOC5507767) 2.90 13.8 25.1% feature · violin
Secretory 40 XP_032219411.2 (LOC5518866) 1.84 13.8 40.3% feature · violin
Secretory 41 LOC116607136 not mapped 2.80 13.5 24.4% feature · violin
Secretory 42 XP_032220427.1 (LOC116603406) 2.90 13.4 24.3% feature · violin
Secretory 43 XP_032241931.2 (LOC5516179) 2.14 13.4 30.0% feature · violin
Secretory 44 XP_048577485.1 (LOC5507853) 2.00 12.7 34.7% feature · violin
Secretory 45 XP_001634484.3 (LOC5514284) 2.97 12.3 21.9% feature · violin
Secretory 46 XP_048577073.1 (LOC116608974) 3.20 12.3 21.1% feature · violin
Secretory 47 XP_048576923.1 (LOC5521154) 0.80 11.6 71.6% feature · violin
Secretory 48 XP_001635083.3 (LOC5514924) 2.92 11.5 19.9% feature · violin
Secretory 49 XP_032235845.1 (LOC116617322) 3.02 11.4 19.5% feature · violin
Secretory 50 XP_001641690.2 (LOC5521923) 2.27 11.4 25.1% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 2 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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