Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Neural 13348 Secretory2054 Gastrodermis1760 Progenitor904 Epidermis780 Neural 2723 Neural 4486 Secretory - Mucous cells447 Neural 3351 Undetermined319 Developing cnidocytes300 Neural 0153 Muscle117

Showing the cell type that LOC125572272 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Neural 3 1 XP_001634125.2 (LOC5513875) 6.12 25.2 87.2% feature · violin
Neural 3 2 XP_048585030.1 (LOC5513301) 6.12 24.6 84.3% feature · violin
Neural 3 3 XP_048585027.1 (LOC5513291) 6.06 24.1 82.6% feature · violin
Neural 3 4 XP_032237897.2 (LOC116618403) 5.61 23.1 76.6% feature · violin
Neural 3 5 XP_032242447.2 (LOC5516714) 6.20 21.7 71.5% feature · violin
Neural 3 6 XP_048582035.1 (LOC5519695) 4.85 17.5 68.1% feature · violin
Neural 3 7 LOC116619145 not mapped 5.38 17.1 59.0% feature · violin
Neural 3 8 XP_032239008.1 (LOC5513575) 5.49 16.0 53.0% feature · violin
Neural 3 9 XP_032232822.1 (LOC116615375) 3.38 13.2 49.9% feature · violin
Neural 3 10 LOC116602266 not mapped 5.16 12.1 39.6% feature · violin
Neural 3 11 LOC116619509 not mapped 4.54 11.5 39.3% feature · violin
Neural 3 12 XP_001637076.2 (LOC5517034) 1.14 11.0 95.4% feature · violin
Neural 3 13 XP_032222624.1 (LOC5521423) 3.17 10.6 40.2% feature · violin
Neural 3 14 XP_032218868.1 (LOC5518290) 4.39 10.1 34.2% feature · violin
Neural 3 15 LOC125570099 not mapped 2.26 10.0 45.3% feature · violin
Neural 3 16 XP_032239471.2 (LOC5513963) 3.01 8.8 33.9% feature · violin
Neural 3 17 XP_048576991.1 (LOC5506296) 2.80 8.4 33.6% feature · violin
Neural 3 18 XP_048585159.1 (LOC125567993) 3.33 8.2 30.8% feature · violin
Neural 3 19 XP_032241346.2 (LOC5515766) 2.93 7.9 30.5% feature · violin
Neural 3 20 XP_048575325.1 (LOC116611066) 2.38 7.8 33.3% feature · violin
Neural 3 21 XP_048588667.1 (LOC5502302) 4.14 7.5 25.4% feature · violin
Neural 3 22 XP_032221960.2 (LOC5521015) 1.18 7.4 58.7% feature · violin
Neural 3 23 XP_048578885.1 (LOC116619978) 3.13 7.4 28.5% feature · violin
Neural 3 24 XP_001628259.2 (LOC5507636) 4.81 7.4 24.2% feature · violin
Neural 3 25 XP_032234226.1 (LOC5509412) 1.69 7.1 37.0% feature · violin
Neural 3 26 XP_001639646.2 (LOC5519764) 5.01 7.0 23.1% feature · violin
Neural 3 27 LOC116608898 not mapped 2.16 6.9 30.8% feature · violin
Neural 3 28 XP_048580908.1 (LOC5512636) 1.61 6.9 38.5% feature · violin
Neural 3 29 XP_032223576.1 (LOC5522235) 2.68 6.5 25.4% feature · violin
Neural 3 30 XP_001628073.1 (LOC5507445) 0.81 6.5 67.8% feature · violin
Neural 3 31 XP_032231493.2 (LOC116614511) 1.77 6.4 33.3% feature · violin
Neural 3 32 LOC116620349 not mapped 5.14 6.3 20.8% feature · violin
Neural 3 33 XP_048588540.1 (LOC5506797) 3.11 6.3 23.6% feature · violin
Neural 3 34 XP_001639811.2 (LOC5519937) 1.77 6.3 31.9% feature · violin
Neural 3 35 XP_032221582.2 (LOC5520623) 3.09 6.2 23.1% feature · violin
Neural 3 36 LOC116603358 not mapped 3.94 6.1 21.1% feature · violin
Neural 3 37 XP_001637998.2 (LOC5518077) 1.56 6.0 32.2% feature · violin
Neural 3 38 XP_048585929.1 (LOC5512976) 2.28 5.9 24.5% feature · violin
Neural 3 39 XP_001639634.1 (LOC5519662) 0.92 5.8 52.7% feature · violin
Neural 3 40 XP_032238357.2 (LOC116618583) 0.30 5.8 99.7% feature · violin
Neural 3 41 LOC125557981 not mapped 0.40 5.8 100.0% feature · violin
Neural 3 42 XP_032223098.1 (LOC5522012) 3.99 5.7 19.9% feature · violin
Neural 3 43 XP_048580223.1 (LOC5517949) 2.03 5.7 26.2% feature · violin
Neural 3 44 LOC125560851 not mapped 0.51 5.7 89.7% feature · violin
Neural 3 45 LOC125572272 not mapped 0.52 5.7 84.9% feature · violin
Neural 3 46 XP_032219411.2 (LOC5518866) 1.08 5.6 43.6% feature · violin
Neural 3 47 LOC116619293 not mapped 1.94 5.5 25.9% feature · violin
Neural 3 48 XP_032241597.2 (LOC116620124) 4.27 5.5 18.5% feature · violin
Neural 3 49 LOC116607890 not mapped 0.49 5.2 94.6% feature · violin
Neural 3 50 XP_001626548.1 (LOC5505797) 0.60 5.2 70.7% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 12 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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