Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Neural 13348 Secretory2054 Gastrodermis1760 Progenitor904 Epidermis780 Neural 2723 Neural 4486 Secretory - Mucous cells447 Neural 3351 Undetermined319 Developing cnidocytes300 Neural 0153 Muscle117

Showing the cell type that LOC5505681 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Muscle 1 XP_032242793.2 (LOC5516909) 6.43 18.3 100.0% feature · violin
Muscle 2 XP_001634837.2 (LOC5514662) 8.30 18.2 98.3% feature · violin
Muscle 3 XP_001639449.1 (LOC5519548) 8.43 18.2 98.3% feature · violin
Muscle 4 XP_001630069.1 (LOC5509562) 3.69 17.8 100.0% feature · violin
Muscle 5 XP_032231043.1 (LOC116601122) 6.24 17.7 98.3% feature · violin
Muscle 6 XP_001630767.1 (LOC5510284) 8.02 17.3 94.0% feature · violin
Muscle 7 XP_032231813.2 (LOC5507355) 5.46 16.7 94.9% feature · violin
Muscle 8 XP_001629293.1 (LOC5508736) 4.19 16.4 96.6% feature · violin
Muscle 9 XP_001636138.1 (LOC5515976) 7.30 15.3 83.8% feature · violin
Muscle 10 XP_032219787.2 (LOC5519085) 3.75 14.2 90.6% feature · violin
Muscle 11 XP_001625680.1 (LOC5504786) 7.05 14.1 76.9% feature · violin
Muscle 12 XP_032222514.1 (LOC5521417) 6.87 14.0 76.9% feature · violin
Muscle 13 XP_048580181.1 (LOC5514355) 4.36 13.9 84.6% feature · violin
Muscle 14 XP_048579266.1 (LOC5521826) 3.76 13.8 89.7% feature · violin
Muscle 15 XP_001635291.1 (LOC5515095) 5.79 12.5 70.1% feature · violin
Muscle 16 XP_032236246.1 (LOC116617568) 4.85 9.0 52.1% feature · violin
Muscle 17 XP_032235382.1 (LOC5510330) 4.07 8.4 50.4% feature · violin
Muscle 18 XP_032225045.1 (LOC5500764) 6.41 7.7 41.9% feature · violin
Muscle 19 XP_048582637.1 (LOC116621199) 3.90 7.4 45.3% feature · violin
Muscle 20 XP_001628544.2 (LOC5507933) 3.87 7.3 44.4% feature · violin
Muscle 21 XP_048590240.1 (LOC5501347) 2.84 6.7 47.0% feature · violin
Muscle 22 XP_048586040.1 (LOC5502507) 1.44 6.4 95.7% feature · violin
Muscle 23 XP_032221484.2 (LOC5520573) 3.91 6.2 37.6% feature · violin
Muscle 24 XP_001630169.2 (LOC5509651) 1.61 6.2 68.4% feature · violin
Muscle 25 XP_001637576.3 (LOC5517564) 3.02 6.2 41.0% feature · violin
Muscle 26 XP_032232453.2 (LOC116614942) 1.68 5.8 59.8% feature · violin
Muscle 27 XP_001634710.2 (LOC5514500) 1.76 5.7 55.6% feature · violin
Muscle 28 XP_048581474.1 (LOC5522262) 3.01 5.5 37.6% feature · violin
Muscle 29 XP_048584452.1 (LOC5515160) 1.90 5.3 47.9% feature · violin
Muscle 30 XP_048585681.1 (LOC5499548) 1.21 5.1 70.9% feature · violin
Muscle 31 XP_032239535.2 (LOC5514101) 1.35 5.1 63.2% feature · violin
Muscle 32 XP_032233877.2 (LOC116616109) 1.84 5.0 46.2% feature · violin
Muscle 33 XP_048586218.1 (LOC5510755) 1.63 5.0 48.7% feature · violin
Muscle 34 XP_001624357.2 (LOC5503261) 1.23 5.0 70.9% feature · violin
Muscle 35 XP_001626001.2 (LOC5505177) 3.36 4.8 29.9% feature · violin
Muscle 36 XP_001637845.3 (LOC5517841) 3.21 4.8 30.8% feature · violin
Muscle 37 XP_048585707.1 (LOC5507108) 2.31 4.8 35.9% feature · violin
Muscle 38 XP_001636442.3 (LOC5516360) 1.57 4.6 46.2% feature · violin
Muscle 39 XP_001633530.2 (LOC5513211) 2.67 4.6 31.6% feature · violin
Muscle 40 XP_001622874.2 (LOC5501596) 1.22 4.5 65.0% feature · violin
Muscle 41 XP_001634916.2 (LOC5514716) 1.86 4.4 37.6% feature · violin
Muscle 42 XP_001640962.2 (LOC5521278) 1.89 4.3 36.8% feature · violin
Muscle 43 XP_048586284.1 (LOC5511143) 2.16 4.3 33.3% feature · violin
Muscle 44 XP_001626291.2 (LOC5505441) 1.95 4.2 34.2% feature · violin
Muscle 45 XP_032220011.2 (LOC116603110) 3.53 4.0 24.8% feature · violin
Muscle 46 XP_048583218.1 (LOC5514467) 1.65 4.0 36.8% feature · violin
Muscle 47 XP_048590489.1 (LOC5503764) 1.10 3.9 54.7% feature · violin
Muscle 48 XP_032218273.2 (LOC116601510) 2.91 3.9 25.6% feature · violin
Muscle 49 XP_032229894.1 (LOC5505681) 2.16 3.9 29.1% feature · violin
Muscle 50 XP_001640922.1 (LOC5521100) 1.17 3.9 47.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry.

TOP