Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Showing the cell type that LOC5509308 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Progenitor 1 XP_001639566.1 (LOC5519679) 1.35 31.4 99.9% feature · violin
Progenitor 2 XP_001622696.2 (LOC5501393) 1.38 31.1 99.0% feature · violin
Progenitor 3 XP_032239366.1 (LOC5513845) 1.23 28.5 99.6% feature · violin
Progenitor 4 XP_001630812.2 (LOC5510328) 1.50 28.4 96.8% feature · violin
Progenitor 5 XP_001633812.2 (LOC5513528) 2.42 28.1 84.0% feature · violin
Progenitor 6 XP_032228425.2 (LOC116611894) 1.96 27.7 96.0% feature · violin
Progenitor 7 XP_001641441.1 (LOC5521661) 1.26 27.6 99.7% feature · violin
Progenitor 8 XP_001639659.2 (LOC5519788) 1.34 27.3 97.0% feature · violin
Progenitor 9 XP_001642047.1 (LOC5522169) 1.11 27.0 99.7% feature · violin
Progenitor 10 XP_001622225.1 (LOC5500843) 1.13 26.9 99.4% feature · violin
Progenitor 11 XP_001625647.2 (LOC5504757) 1.16 26.7 99.1% feature · violin
Progenitor 12 XP_001633500.3 (LOC5513253) 1.42 26.6 96.0% feature · violin
Progenitor 13 XP_001640452.1 (LOC5520513) 0.96 26.5 99.9% feature · violin
Progenitor 14 LOC116615984 not mapped 1.51 26.5 95.0% feature · violin
Progenitor 15 XP_001636454.1 (LOC5516345) 1.18 26.2 99.3% feature · violin
Progenitor 16 XP_001641794.1 (LOC5521910) 1.57 26.1 93.7% feature · violin
Progenitor 17 XP_001627930.1 (LOC5507268) 1.28 26.1 98.8% feature · violin
Progenitor 18 XP_032237044.1 (LOC5511789) 1.02 26.0 99.8% feature · violin
Progenitor 19 XP_001638352.1 (LOC5518478) 2.75 26.0 74.3% feature · violin
Progenitor 20 XP_001639879.2 (LOC5520091) 1.41 25.6 95.5% feature · violin
Progenitor 21 XP_001640445.1 (LOC5520504) 1.09 25.5 99.4% feature · violin
Progenitor 22 XP_001629182.1 (LOC5508579) 1.11 25.5 98.8% feature · violin
Progenitor 23 XP_001629584.1 (LOC5509015) 1.14 25.2 98.0% feature · violin
Progenitor 24 XP_001640327.1 (LOC5520614) 1.06 25.2 99.3% feature · violin
Progenitor 25 XP_001640566.1 (LOC5520747) 1.15 25.2 97.7% feature · violin
Progenitor 26 LOC5507491 not mapped 0.94 25.2 99.9% feature · violin
Progenitor 27 XP_001628718.1 (LOC5508092) 1.22 25.0 97.9% feature · violin
Progenitor 28 XP_032218678.1 (LOC5518158) 1.29 25.0 98.0% feature · violin
Progenitor 29 XP_001624649.1 (LOC5503642) 1.34 24.9 97.6% feature · violin
Progenitor 30 XP_001630296.1 (LOC5509814) 1.36 24.8 97.8% feature · violin
Progenitor 31 XP_001629850.3 (LOC5509308) 1.08 24.7 98.8% feature · violin
Progenitor 32 XP_048576591.1 (LOC5513420) 1.12 24.7 98.8% feature · violin
Progenitor 33 XP_001639626.1 (LOC5519743) 1.24 24.7 97.1% feature · violin
Progenitor 34 XP_001626294.2 (LOC5505446) 1.13 24.7 99.7% feature · violin
Progenitor 35 XP_001636882.2 (LOC5516837) 1.11 24.7 96.9% feature · violin
Progenitor 36 XP_048589003.1 (LOC5506230) 1.20 24.7 97.9% feature · violin
Progenitor 37 XP_001626706.1 (LOC5505965) 1.24 24.5 96.1% feature · violin
Progenitor 38 XP_001623105.1 (LOC5501854) 1.20 24.3 99.1% feature · violin
Progenitor 39 XP_001624703.2 (LOC5503759) 1.18 24.3 98.1% feature · violin
Progenitor 40 XP_032240282.2 (LOC5514817) 1.46 24.2 92.7% feature · violin
Progenitor 41 XP_032221033.1 (LOC5520177) 1.07 24.1 99.4% feature · violin
Progenitor 42 XP_001630483.1 (LOC5509973) 1.29 24.0 96.6% feature · violin
Progenitor 43 XP_001627740.1 (LOC5507075) 1.08 23.9 98.5% feature · violin
Progenitor 44 XP_032242836.1 (LOC5517066) 1.06 23.8 96.2% feature · violin
Progenitor 45 XP_001635479.1 (LOC5515348) 1.28 23.8 97.3% feature · violin
Progenitor 46 XP_001641170.1 (LOC5521372) 1.16 23.6 96.7% feature · violin
Progenitor 47 XP_001623639.1 (LOC5502461) 1.13 23.4 97.2% feature · violin
Progenitor 48 XP_001638681.2 (LOC5518736) 3.10 23.4 58.6% feature · violin
Progenitor 49 XP_001632549.1 (LOC5512172) 1.21 23.4 96.9% feature · violin
Progenitor 50 XP_001626395.1 (LOC5505642) 1.07 23.4 99.2% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 2 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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