Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Showing the cell type that LOC5517801 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Neural 4 1 LOC116617190 5.42 30.7 87.7% feature · violin
Neural 4 2 LOC5517034 2.77 29.3 99.6% feature · violin
Neural 4 3 LOC5511746 5.29 26.5 75.7% feature · violin
Neural 4 4 LOC5518051 5.89 24.9 69.5% feature · violin
Neural 4 5 LOC5517801 4.61 24.2 71.8% feature · violin
Neural 4 6 LOC5522277 5.10 22.2 64.0% feature · violin
Neural 4 7 LOC5510393 5.09 21.0 60.1% feature · violin
Neural 4 8 LOC5506122 5.09 20.8 59.1% feature · violin
Neural 4 9 LOC5522141 4.68 20.6 59.9% feature · violin
Neural 4 10 LOC116608478 4.07 20.6 63.0% feature · violin
Neural 4 11 LOC5519186 2.53 20.1 79.0% feature · violin
Neural 4 12 LOC5509225 2.08 19.7 84.0% feature · violin
Neural 4 13 LOC116613156 4.83 19.5 56.2% feature · violin
Neural 4 14 LOC116616121 4.18 19.4 58.6% feature · violin
Neural 4 15 LOC116618701 4.94 19.0 54.5% feature · violin
Neural 4 16 LOC5518705 4.18 18.3 56.0% feature · violin
Neural 4 17 LOC5507184 4.52 18.1 53.7% feature · violin
Neural 4 18 LOC5518841 2.20 18.1 75.5% feature · violin
Neural 4 19 LOC5504804 2.39 17.4 68.3% feature · violin
Neural 4 20 LOC116619647 4.96 17.2 49.2% feature · violin
Neural 4 21 LOC116616810 3.19 17.2 58.2% feature · violin
Neural 4 22 LOC5512029 2.68 16.6 60.1% feature · violin
Neural 4 23 LOC5502977 4.16 16.6 49.6% feature · violin
Neural 4 24 LOC5520071 4.64 16.5 47.7% feature · violin
Neural 4 25 LOC116616309 2.25 16.1 69.8% feature · violin
Neural 4 26 LOC116619644 5.44 16.1 44.9% feature · violin
Neural 4 27 LOC5508649 2.77 15.9 56.6% feature · violin
Neural 4 28 LOC5515770 2.75 15.7 56.2% feature · violin
Neural 4 29 LOC5505309 2.61 15.1 55.3% feature · violin
Neural 4 30 LOC116608909 5.07 15.0 42.4% feature · violin
Neural 4 31 LOC116602319 3.33 14.5 47.1% feature · violin
Neural 4 32 LOC5509586 5.42 14.2 39.7% feature · violin
Neural 4 33 LOC5510558 5.24 14.0 39.5% feature · violin
Neural 4 34 LOC116614549 4.02 14.0 42.2% feature · violin
Neural 4 35 LOC5511449 5.02 14.0 39.5% feature · violin
Neural 4 36 LOC5509562 1.00 14.0 99.4% feature · violin
Neural 4 37 LOC5511666 0.61 14.0 100.0% feature · violin
Neural 4 38 LOC5507491 0.72 13.9 99.4% feature · violin
Neural 4 39 LOC5505807 5.34 13.8 38.5% feature · violin
Neural 4 40 LOC116620119 2.38 13.4 51.9% feature · violin
Neural 4 41 LOC125570099 2.70 13.2 47.1% feature · violin
Neural 4 42 LOC5518996 4.92 13.1 37.2% feature · violin
Neural 4 43 LOC5506291 2.55 13.1 47.9% feature · violin
Neural 4 44 LOC5502588 1.04 12.8 88.3% feature · violin
Neural 4 45 LOC5517779 2.94 12.8 45.1% feature · violin
Neural 4 46 LOC5521395 1.01 12.7 93.8% feature · violin
Neural 4 47 LOC116614450 2.88 12.7 43.4% feature · violin
Neural 4 48 LOC5512636 2.41 12.7 48.1% feature · violin
Neural 4 49 LOC5518649 1.04 12.6 85.0% feature · violin
Neural 4 50 LOC5503999 4.60 12.5 35.8% feature · violin
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