Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

Cell type: all Neural 13348 Secretory2054 Gastrodermis1760 Progenitor904 Epidermis780 Neural 2723 Neural 4486 Secretory - Mucous cells447 Neural 3351 Undetermined319 Developing cnidocytes300 Neural 0153 Muscle117

Showing the cell type that LOC5520454 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Epidermis 1 XP_001637076.2 (LOC5517034) 3.12 39.8 99.9% feature · violin
Epidermis 2 XP_001628339.1 (LOC5507707) 4.57 38.1 94.5% feature · violin
Epidermis 3 XP_048584704.1 (LOC5499668) 4.56 38.0 90.6% feature · violin
Epidermis 4 XP_048576268.1 (LOC116619369) 3.91 37.6 93.7% feature · violin
Epidermis 5 XP_032234269.2 (LOC116616309) 4.20 37.0 91.7% feature · violin
Epidermis 6 XP_048581375.1 (LOC116620186) 4.83 32.6 80.1% feature · violin
Epidermis 7 XP_032222486.2 (LOC5521391) 3.88 32.6 81.5% feature · violin
Epidermis 8 XP_048578359.1 (LOC116619995) 4.89 32.4 78.8% feature · violin
Epidermis 9 XP_048588951.1 (LOC116614342) 4.38 31.3 78.7% feature · violin
Epidermis 10 XP_048577262.1 (LOC5508656) 4.86 31.3 74.6% feature · violin
Epidermis 11 XP_001636029.2 (LOC5515909) 4.41 31.1 75.4% feature · violin
Epidermis 12 XP_001634710.2 (LOC5514500) 3.39 29.7 79.5% feature · violin
Epidermis 13 XP_048584705.1 (LOC5498142) 3.61 29.4 76.2% feature · violin
Epidermis 14 XP_048578358.1 (LOC5515663) 5.17 28.4 65.8% feature · violin
Epidermis 15 XP_048581063.1 (LOC5514282) 4.28 26.7 64.2% feature · violin
Epidermis 16 XP_001631910.1 (LOC5511494) 3.81 26.3 65.4% feature · violin
Epidermis 17 XP_001636857.1 (LOC5516764) 3.36 25.5 67.1% feature · violin
Epidermis 18 XP_032237143.1 (LOC5511839) 2.14 24.1 80.6% feature · violin
Epidermis 19 XP_048584707.1 (LOC5512040) 4.15 23.0 54.6% feature · violin
Epidermis 20 XP_048580171.1 (LOC116615554) 4.09 22.8 57.1% feature · violin
Epidermis 21 XP_048578917.1 (LOC5515629) 4.11 21.8 54.2% feature · violin
Epidermis 22 XP_001630069.1 (LOC5509562) 1.18 20.9 98.6% feature · violin
Epidermis 23 XP_048577506.1 (LOC116618501) 2.87 20.8 59.2% feature · violin
Epidermis 24 XP_032231580.2 (LOC116614557) 2.48 20.8 63.6% feature · violin
Epidermis 25 XP_048577703.1 (LOC116605189) 5.27 20.7 46.4% feature · violin
Epidermis 26 XP_001622689.1 (LOC5501387) 4.07 19.7 46.8% feature · violin
Epidermis 27 XP_001636866.1 (LOC5516770) 3.22 19.6 51.5% feature · violin
Epidermis 28 XP_048588501.1 (LOC5506209) 4.04 19.5 46.2% feature · violin
Epidermis 29 XP_001625867.1 (LOC5504994) 2.37 19.5 61.4% feature · violin
Epidermis 30 XP_048580141.1 (LOC5520454) 4.11 19.1 45.4% feature · violin
Epidermis 31 XP_001637222.2 (LOC5517140) 3.26 19.0 49.0% feature · violin
Epidermis 32 XP_048590043.1 (LOC5517578) 3.68 18.2 44.9% feature · violin
Epidermis 33 XP_001633847.1 (LOC5513560) 0.83 18.1 98.3% feature · violin
Epidermis 34 XP_001622285.2 (LOC5500914) 2.39 18.0 56.7% feature · violin
Epidermis 35 XP_048578732.1 (LOC5496459) 3.12 17.4 45.8% feature · violin
Epidermis 36 XP_001642047.1 (LOC5522169) 0.80 17.2 98.5% feature · violin
Epidermis 37 XP_001622225.1 (LOC5500843) 0.80 17.2 98.3% feature · violin
Epidermis 38 XP_048582569.1 (LOC5502244) 1.86 17.1 61.4% feature · violin
Epidermis 39 XP_048588121.1 (LOC5517292) 3.96 16.9 40.4% feature · violin
Epidermis 40 XP_001627930.1 (LOC5507268) 0.93 16.9 96.4% feature · violin
Epidermis 41 XP_048581358.1 (LOC5505284) 2.77 16.8 45.9% feature · violin
Epidermis 42 XP_001636882.2 (LOC5516837) 0.77 15.6 95.0% feature · violin
Epidermis 43 XP_048584521.1 (LOC5519910) 0.77 15.5 98.3% feature · violin
Epidermis 44 XP_032218678.1 (LOC5518158) 0.89 15.4 95.4% feature · violin
Epidermis 45 XP_032226201.1 (LOC5502042) 3.97 15.4 36.4% feature · violin
Epidermis 46 XP_048581955.1 (LOC5522228) 4.29 15.3 35.5% feature · violin
Epidermis 47 XP_048587521.1 (LOC5506148) 3.13 15.3 41.0% feature · violin
Epidermis 48 XP_048576715.1 (LOC125559017) 2.51 15.3 44.5% feature · violin
Epidermis 49 XP_032237044.1 (LOC5511789) 0.65 15.3 99.4% feature · violin
Epidermis 50 LOC116620760 not mapped 1.00 15.3 93.3% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 1 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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