Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.13612 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 10 1 NV2.8883 not mapped 4.41 21.1 98.9% feature · violin
Cluster 10 2 XP_048579672.1 (NV2.12401) 2.36 20.9 100.0% feature · violin
Cluster 10 3 XP_048588445.1 (NV2.21495) 2.48 20.3 99.5% feature · violin
Cluster 10 4 NV2.6264 not mapped 3.01 18.6 94.5% feature · violin
Cluster 10 5 XP_001628419.1 (NV2.21600) 2.25 18.2 98.4% feature · violin
Cluster 10 6 NV2.1063 not mapped 1.76 18.1 100.0% feature · violin
Cluster 10 7 XP_032225088.2 (NV2.21497) 2.44 17.3 92.3% feature · violin
Cluster 10 8 NV2.22771 not mapped 1.93 16.8 97.3% feature · violin
Cluster 10 9 XP_048576264.1 (NV2.7282) 1.71 16.6 100.0% feature · violin
Cluster 10 10 XP_048590043.1 (NV2.5699) 1.57 16.6 99.5% feature · violin
Cluster 10 11 NV2.1060 not mapped 2.52 15.9 86.8% feature · violin
Cluster 10 12 XP_048576888.1 (NV2.4259) 2.47 15.9 92.9% feature · violin
Cluster 10 13 XP_048588167.1 (NV2.22318) 2.03 15.8 91.2% feature · violin
Cluster 10 14 NV2.25875 not mapped 2.38 15.5 92.9% feature · violin
Cluster 10 15 NV2.10508 not mapped 2.27 15.4 87.4% feature · violin
Cluster 10 16 XP_001623639.1 (NV2.5541) 1.00 14.7 100.0% feature · violin
Cluster 10 17 NV2.1062 not mapped 1.12 14.6 100.0% feature · violin
Cluster 10 18 XP_048590519.1 (NV2.6575) 1.89 14.5 89.0% feature · violin
Cluster 10 19 NV2.5844 not mapped 1.60 14.4 93.4% feature · violin
Cluster 10 20 XP_001638334.1 (NV2.6194) 1.54 14.4 95.1% feature · violin
Cluster 10 21 XP_001635435.2 (NV2.25312) 0.78 14.4 100.0% feature · violin
Cluster 10 22 XP_048579967.1 (NV2.12390) 1.84 14.2 90.1% feature · violin
Cluster 10 23 NV2.13612 not mapped 1.22 13.5 100.0% feature · violin
Cluster 10 24 XP_048586710.1 (NV2.19476) 2.44 13.5 76.9% feature · violin
Cluster 10 25 NV2.12403 not mapped 1.99 13.5 81.9% feature · violin
Cluster 10 26 XP_001631628.1 (NV2.23899) 2.77 13.4 70.9% feature · violin
Cluster 10 27 NV2.935 not mapped 1.01 13.2 100.0% feature · violin
Cluster 10 28 XP_032233444.1 (NV2.23522) 1.35 13.0 100.0% feature · violin
Cluster 10 29 NV2.12439 not mapped 1.15 13.0 99.5% feature · violin
Cluster 10 30 XP_032236785.2 (NV2.17187) 0.59 13.0 100.0% feature · violin
Cluster 10 31 XP_048582523.1 (NV2.15779) 1.30 12.8 98.9% feature · violin
Cluster 10 32 NV2.4127 not mapped 1.27 12.8 96.7% feature · violin
Cluster 10 33 XP_001622502.3 (NV2.25537) 2.42 12.8 72.0% feature · violin
Cluster 10 34 NV2.2296 not mapped 1.42 12.7 94.5% feature · violin
Cluster 10 35 NV2.17214 not mapped 1.26 12.7 97.8% feature · violin
Cluster 10 36 XP_001625627.3 (NV2.8673) 1.07 12.6 100.0% feature · violin
Cluster 10 37 XP_032226202.2 (NV2.23636) 1.14 12.6 100.0% feature · violin
Cluster 10 38 NV2.23965 not mapped 1.77 12.6 83.5% feature · violin
Cluster 10 39 NV2.20515 not mapped 1.04 12.6 100.0% feature · violin
Cluster 10 40 NV2.2881 not mapped 0.87 12.5 100.0% feature · violin
Cluster 10 41 XP_001641516.2 (NV2.12319) 5.26 12.3 54.9% feature · violin
Cluster 10 42 XP_048577374.1 (NV2.8853) 1.65 12.2 84.6% feature · violin
Cluster 10 43 XP_048576816.1 (NV2.4262) 1.62 12.1 84.6% feature · violin
Cluster 10 44 XP_032239646.2 (NV2.23230) 2.58 12.0 65.9% feature · violin
Cluster 10 45 NV2.9540 not mapped 2.91 11.9 63.2% feature · violin
Cluster 10 46 NV2.1066 not mapped 1.33 11.9 94.0% feature · violin
Cluster 10 47 NV2.25017 not mapped 1.20 11.9 98.9% feature · violin
Cluster 10 48 XP_001629438.1 (NV2.15962) 1.01 11.8 100.0% feature · violin
Cluster 10 49 XP_001631450.1 (NV2.15858) 1.08 11.8 100.0% feature · violin
Cluster 10 50 NV2.5519 not mapped 1.01 11.8 98.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 23 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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