Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.14263 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 15 1 XP_001623107.3 (NV2.14263) 6.06 26.3 100.0% feature · violin
Cluster 15 2 XP_001627459.2 (NV2.2595) 6.20 26.0 99.6% feature · violin
Cluster 15 3 XP_032240576.1 (NV2.18099) 5.00 25.8 100.0% feature · violin
Cluster 15 4 NV2.1052 not mapped 5.18 25.7 100.0% feature · violin
Cluster 15 5 XP_001625325.1 (NV2.5890) 6.04 25.6 100.0% feature · violin
Cluster 15 6 NV2.14621 not mapped 5.98 25.6 98.7% feature · violin
Cluster 15 7 XP_001623996.1 (NV2.9419) 6.37 25.5 99.6% feature · violin
Cluster 15 8 NV2.25140 not mapped 6.25 25.4 97.9% feature · violin
Cluster 15 9 XP_032218050.1 (NV2.23418) 7.69 25.4 97.9% feature · violin
Cluster 15 10 XP_032233478.1 (NV2.12604) 4.09 25.4 100.0% feature · violin
Cluster 15 11 XP_032240537.1 (NV2.18097) 7.91 25.4 97.1% feature · violin
Cluster 15 12 NV2.19065 not mapped 5.41 25.3 100.0% feature · violin
Cluster 15 13 XP_032231412.1 (NV2.4812) 5.20 25.1 98.7% feature · violin
Cluster 15 14 XP_001641136.1 (NV2.11657) 6.39 25.1 96.2% feature · violin
Cluster 15 15 XP_032243207.2 (NV2.22355) 6.83 25.0 96.6% feature · violin
Cluster 15 16 XP_032221774.2 (NV2.20475) 6.71 24.8 96.2% feature · violin
Cluster 15 17 XP_001636897.2 (NV2.8037) 4.82 24.8 98.3% feature · violin
Cluster 15 18 XP_032238655.1 (NV2.14187) 4.43 24.7 100.0% feature · violin
Cluster 15 19 XP_032221823.2 (NV2.20474) 8.03 24.6 94.1% feature · violin
Cluster 15 20 XP_001628493.2 (NV2.19669) 3.76 24.6 99.6% feature · violin
Cluster 15 21 XP_001630840.2 (NV2.22963) 3.35 24.3 98.3% feature · violin
Cluster 15 22 XP_001639567.1 (NV2.16600) 9.88 24.0 91.2% feature · violin
Cluster 15 23 XP_032237477.1 (NV2.3891) 5.76 24.0 100.0% feature · violin
Cluster 15 24 XP_032241419.1 (NV2.12560) 4.31 23.8 94.5% feature · violin
Cluster 15 25 NV2.15882 not mapped 7.36 23.7 91.2% feature · violin
Cluster 15 26 XP_001641336.2 (NV2.17964) 9.20 23.7 90.3% feature · violin
Cluster 15 27 NV2.17917 not mapped 4.81 23.5 92.9% feature · violin
Cluster 15 28 XP_048581004.1 (NV2.15076) 5.14 23.5 92.9% feature · violin
Cluster 15 29 XP_048580793.1 (NV2.13257) 4.45 23.5 94.1% feature · violin
Cluster 15 30 XP_001641870.2 (NV2.3488) 4.29 23.2 94.1% feature · violin
Cluster 15 31 XP_048588130.1 (NV2.22804) 3.43 23.1 99.2% feature · violin
Cluster 15 32 XP_001639100.2 (NV2.2977) 3.07 23.1 96.2% feature · violin
Cluster 15 33 XP_032236866.1 (NV2.22508) 4.23 23.0 100.0% feature · violin
Cluster 15 34 NV2.3955 not mapped 5.12 23.0 89.9% feature · violin
Cluster 15 35 NV2.3892 not mapped 4.96 22.8 92.4% feature · violin
Cluster 15 36 XP_032221710.1 (NV2.20410) 4.14 22.8 92.0% feature · violin
Cluster 15 37 XP_048577854.1 (NV2.8804) 5.72 22.8 89.9% feature · violin
Cluster 15 38 XP_032243077.1 (NV2.472) 8.37 22.7 86.6% feature · violin
Cluster 15 39 XP_032234810.1 (NV2.9040) 2.71 22.6 99.2% feature · violin
Cluster 15 40 XP_032223622.2 (NV2.16313) 8.73 22.6 86.1% feature · violin
Cluster 15 41 XP_032223353.2 (NV2.14826) 2.57 22.6 100.0% feature · violin
Cluster 15 42 XP_001641794.1 (NV2.9713) 2.84 22.4 100.0% feature · violin
Cluster 15 43 XP_001639659.2 (NV2.18467) 3.33 22.4 100.0% feature · violin
Cluster 15 44 XP_001635220.1 (NV2.18156) 2.54 22.3 98.7% feature · violin
Cluster 15 45 XP_001639308.1 (NV2.25210) 2.69 22.3 100.0% feature · violin
Cluster 15 46 XP_001628718.1 (NV2.6333) 2.83 22.2 100.0% feature · violin
Cluster 15 47 NV2.17963 not mapped 8.84 22.1 84.0% feature · violin
Cluster 15 48 XP_032242836.1 (NV2.13111) 2.80 22.1 100.0% feature · violin
Cluster 15 49 XP_001641170.1 (NV2.17856) 2.56 22.1 100.0% feature · violin
Cluster 15 50 XP_001633026.1 (NV2.21707) 3.20 22.0 99.6% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

TOP