Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.16453 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 12 1 XP_032231249.2 (NV2.6859) 2.65 36.4 99.5% feature · violin
Cluster 12 2 XP_001635716.1 (NV2.10834) 2.65 35.0 91.8% feature · violin
Cluster 12 3 NV2.1609 not mapped 1.96 33.7 98.5% feature · violin
Cluster 12 4 XP_001630812.2 (NV2.9087) 1.97 31.9 99.6% feature · violin
Cluster 12 5 XP_001634600.1 (NV2.1893) 2.74 31.7 93.2% feature · violin
Cluster 12 6 NV2.3465 not mapped 2.13 31.7 89.9% feature · violin
Cluster 12 7 XP_032228155.2 (NV2.16402) 2.22 31.6 99.4% feature · violin
Cluster 12 8 XP_001629420.2 (NV2.15973) 1.42 31.5 99.5% feature · violin
Cluster 12 9 XP_001625647.2 (NV2.8478) 2.01 31.4 99.4% feature · violin
Cluster 12 10 XP_001631045.1 (NV2.2816) 2.06 31.3 99.5% feature · violin
Cluster 12 11 XP_001637401.1 (NV2.1193) 1.59 30.8 99.7% feature · violin
Cluster 12 12 XP_032220058.1 (NV2.25180) 1.97 30.6 99.2% feature · violin
Cluster 12 13 XP_001622696.2 (NV2.5947) 2.10 30.3 99.4% feature · violin
Cluster 12 14 XP_032223221.2 (NV2.3528) 2.13 30.3 95.0% feature · violin
Cluster 12 15 XP_001626060.1 (NV2.11122) 2.12 30.1 99.1% feature · violin
Cluster 12 16 XP_032238966.2 (NV2.3168) 2.91 30.0 82.4% feature · violin
Cluster 12 17 XP_001641710.2 (NV2.3378) 2.98 29.8 78.7% feature · violin
Cluster 12 18 XP_001636454.1 (NV2.132) 1.90 29.7 99.4% feature · violin
Cluster 12 19 XP_032219765.2 (NV2.643) 1.70 29.6 99.6% feature · violin
Cluster 12 20 XP_032238556.1 (NV2.13006) 1.60 29.6 99.9% feature · violin
Cluster 12 21 XP_001639131.1 (NV2.2866) 0.94 29.4 100.0% feature · violin
Cluster 12 22 XP_001633847.1 (NV2.3097) 1.42 29.3 100.0% feature · violin
Cluster 12 23 XP_001625568.1 (NV2.7821) 2.00 29.2 98.7% feature · violin
Cluster 12 24 XP_001639626.1 (NV2.16453) 2.08 29.0 99.5% feature · violin
Cluster 12 25 XP_001641027.2 (NV2.11633) 1.70 29.0 99.1% feature · violin
Cluster 12 26 XP_001640445.1 (NV2.7080) 1.93 29.0 99.4% feature · violin
Cluster 12 27 NV2.15406 not mapped 1.25 28.9 99.2% feature · violin
Cluster 12 28 NV2.5887 not mapped 2.00 28.9 99.6% feature · violin
Cluster 12 29 XP_001634973.2 (NV2.10979) 1.72 28.9 96.1% feature · violin
Cluster 12 30 XP_001640566.1 (NV2.20473) 2.08 28.9 99.5% feature · violin
Cluster 12 31 XP_001623735.2 (NV2.24312) 2.44 28.8 83.4% feature · violin
Cluster 12 32 XP_001624649.1 (NV2.9355) 1.94 28.7 97.7% feature · violin
Cluster 12 33 XP_032236923.1 (NV2.2218) 1.84 28.7 98.2% feature · violin
Cluster 12 34 XP_001641859.1 (NV2.3454) 1.96 28.7 98.9% feature · violin
Cluster 12 35 XP_001622225.1 (NV2.6672) 1.87 28.6 99.4% feature · violin
Cluster 12 36 XP_001631784.1 (NV2.10086) 2.11 28.6 97.7% feature · violin
Cluster 12 37 XP_001631596.1 (NV2.23903) 1.82 28.5 99.5% feature · violin
Cluster 12 38 NV2.6469 not mapped 1.55 28.4 96.8% feature · violin
Cluster 12 39 XP_001628718.1 (NV2.6333) 2.00 28.3 98.9% feature · violin
Cluster 12 40 NV2.17926 not mapped 1.12 28.2 99.9% feature · violin
Cluster 12 41 XP_048584521.1 (NV2.18567) 2.01 28.2 99.4% feature · violin
Cluster 12 42 XP_001623105.1 (NV2.14258) 2.02 28.1 98.2% feature · violin
Cluster 12 43 XP_001633436.1 (NV2.17007) 2.12 28.1 98.7% feature · violin
Cluster 12 44 XP_001637830.2 (NV2.24090) 1.82 28.0 99.2% feature · violin
Cluster 12 45 NV2.10891 not mapped 2.48 28.0 98.7% feature · violin
Cluster 12 46 XP_001623650.2 (NV2.16803) 1.27 27.9 99.7% feature · violin
Cluster 12 47 NV2.7223 not mapped 2.02 27.9 98.0% feature · violin
Cluster 12 48 XP_048576591.1 (NV2.4360) 1.85 27.9 99.0% feature · violin
Cluster 12 49 XP_001641170.1 (NV2.17856) 1.83 27.8 99.9% feature · violin
Cluster 12 50 NV2.992 not mapped 1.45 27.8 96.9% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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