Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.1832 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 13 1 NV2.19382 not mapped 2.90 10.0 100.0% feature · violin
Cluster 13 2 NV2.13030 not mapped 3.81 9.8 97.9% feature · violin
Cluster 13 3 XP_001635420.1 (NV2.25277) 2.01 9.7 100.0% feature · violin
Cluster 13 4 NV2.15516 not mapped 1.18 9.7 100.0% feature · violin
Cluster 13 5 NV2.25931 not mapped 3.33 9.5 100.0% feature · violin
Cluster 13 6 NV2.25908 not mapped 3.55 9.4 91.7% feature · violin
Cluster 13 7 NV2.9450 not mapped 3.18 9.2 89.6% feature · violin
Cluster 13 8 XP_001628036.3 (NV2.4257) 1.06 9.0 100.0% feature · violin
Cluster 13 9 XP_032241451.2 (NV2.12570) 1.88 8.7 100.0% feature · violin
Cluster 13 10 XP_001626018.2 (NV2.4167) 1.54 8.5 100.0% feature · violin
Cluster 13 11 XP_048588856.1 (NV2.21694) 1.06 8.3 100.0% feature · violin
Cluster 13 12 XP_048588854.1 (NV2.21695) 1.15 8.3 100.0% feature · violin
Cluster 13 13 NV2.13027 not mapped 2.33 8.2 93.8% feature · violin
Cluster 13 14 XP_032222974.2 (NV2.12293) 1.20 8.2 100.0% feature · violin
Cluster 13 15 XP_001634577.2 (NV2.11378) 1.44 8.1 100.0% feature · violin
Cluster 13 16 XP_032228234.2 (NV2.13830) 1.82 8.1 100.0% feature · violin
Cluster 13 17 XP_001625005.2 (NV2.13837) 1.82 8.0 100.0% feature · violin
Cluster 13 18 XP_048581379.1 (NV2.14524) 1.08 8.0 100.0% feature · violin
Cluster 13 19 XP_001632005.3 (NV2.22531) 0.93 7.9 100.0% feature · violin
Cluster 13 20 XP_048582498.1 (NV2.15517) 1.04 7.8 100.0% feature · violin
Cluster 13 21 NV2.2344 not mapped 2.96 7.7 79.2% feature · violin
Cluster 13 22 XP_001626687.3 (NV2.6473) 0.66 7.7 100.0% feature · violin
Cluster 13 23 NV2.9410 not mapped 3.06 7.6 77.1% feature · violin
Cluster 13 24 XP_048581809.1 (NV2.1955) 1.91 7.6 93.8% feature · violin
Cluster 13 25 NV2.1832 not mapped 1.32 7.5 100.0% feature · violin
Cluster 13 26 NV2.1496 not mapped 1.52 7.4 100.0% feature · violin
Cluster 13 27 XP_001641769.2 (NV2.3242) 1.01 7.4 100.0% feature · violin
Cluster 13 28 XP_032226202.2 (NV2.23636) 1.23 7.4 100.0% feature · violin
Cluster 13 29 NV2.2414 not mapped 2.09 7.3 91.7% feature · violin
Cluster 13 30 NV2.8218 not mapped 3.21 7.3 70.8% feature · violin
Cluster 13 31 XP_048588459.1 (NV2.1969) 0.99 7.3 100.0% feature · violin
Cluster 13 32 XP_032219811.2 (NV2.706) 1.24 7.2 100.0% feature · violin
Cluster 13 33 XP_001634444.3 (NV2.13469) 1.75 7.2 93.8% feature · violin
Cluster 13 34 XP_032234505.2 (NV2.7902) 1.27 7.2 100.0% feature · violin
Cluster 13 35 XP_032240754.2 (NV2.24965) 1.60 7.2 93.8% feature · violin
Cluster 13 36 XP_048586961.1 (NV2.24477) 1.32 7.2 100.0% feature · violin
Cluster 13 37 XP_001641216.2 (NV2.17996) 1.48 7.2 97.9% feature · violin
Cluster 13 38 XP_001641215.2 (NV2.17991) 1.27 7.1 100.0% feature · violin
Cluster 13 39 XP_001626406.2 (NV2.23444) 1.48 7.1 97.9% feature · violin
Cluster 13 40 XP_001624482.1 (NV2.20178) 0.83 7.1 100.0% feature · violin
Cluster 13 41 XP_001640843.3 (NV2.18780) 1.39 7.0 100.0% feature · violin
Cluster 13 42 NV2.8220 not mapped 3.31 7.0 66.7% feature · violin
Cluster 13 43 XP_032223143.1 (NV2.3357) 1.39 7.0 100.0% feature · violin
Cluster 13 44 NV2.21696 not mapped 1.21 7.0 100.0% feature · violin
Cluster 13 45 NV2.25910 not mapped 2.80 7.0 72.9% feature · violin
Cluster 13 46 XP_001640005.1 (NV2.6963) 1.45 7.0 100.0% feature · violin
Cluster 13 47 NV2.15793 not mapped 1.47 7.0 100.0% feature · violin
Cluster 13 48 XP_001639631.3 (NV2.16440) 1.55 7.0 100.0% feature · violin
Cluster 13 49 XP_032230579.1 (NV2.1617) 1.24 7.0 100.0% feature · violin
Cluster 13 50 NV2.17732 not mapped 0.65 6.9 100.0% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 18 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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