Cell Marker

Marker genes are ranked by the Wilcoxon rank-sum test within each cell type, against all other cells. Because an adjusted p-value is minute for almost every gene once a dataset runs to tens of thousands of cells, the table is better filtered on log2 fold change and percent detected. Click any gene to plot its expression; click any cell type to isolate it in the atlas.

This dataset's clusters have not been assigned cell-type names in the source study, so they are listed as cluster N. The number beside each is how many marker genes are recorded for it.

Showing the cell type that NV2.18467 is ranked highest in.

Cell type Rank Gene log2 FC Score % detected Plot
Cluster 16 1 NV2.8891 not mapped 5.30 36.6 99.8% feature · violin
Cluster 16 2 NV2.16466 not mapped 3.06 36.1 100.0% feature · violin
Cluster 16 3 XP_001630598.2 (NV2.7700) 5.35 34.8 100.0% feature · violin
Cluster 16 4 XP_001640689.1 (NV2.20404) 3.53 34.7 100.0% feature · violin
Cluster 16 5 XP_032222519.2 (NV2.17865) 4.33 34.5 100.0% feature · violin
Cluster 16 6 XP_032234576.2 (NV2.20761) 3.26 34.0 99.6% feature · violin
Cluster 16 7 XP_032225337.1 (NV2.1741) 2.46 33.9 99.5% feature · violin
Cluster 16 8 XP_001640903.2 (NV2.1654) 5.24 33.7 100.0% feature · violin
Cluster 16 9 XP_001635479.1 (NV2.25320) 3.04 33.6 100.0% feature · violin
Cluster 16 10 XP_001626598.1 (NV2.10) 3.23 33.4 100.0% feature · violin
Cluster 16 11 XP_001631308.3 (NV2.4742) 3.47 33.1 99.5% feature · violin
Cluster 16 12 XP_001636593.2 (NV2.16121) 5.30 33.0 99.3% feature · violin
Cluster 16 13 XP_001641534.3 (NV2.12087) 4.92 33.0 100.0% feature · violin
Cluster 16 14 XP_001629343.2 (NV2.12640) 1.60 33.0 100.0% feature · violin
Cluster 16 15 XP_001628997.1 (NV2.24396) 3.14 32.9 97.7% feature · violin
Cluster 16 16 NV2.23463 not mapped 2.82 32.8 100.0% feature · violin
Cluster 16 17 NV2.8570 not mapped 1.18 32.7 100.0% feature · violin
Cluster 16 18 XP_048581820.1 (NV2.16725) 2.79 32.7 99.8% feature · violin
Cluster 16 19 XP_032223353.2 (NV2.14826) 2.41 32.7 100.0% feature · violin
Cluster 16 20 NV2.8480 not mapped 2.99 32.6 98.2% feature · violin
Cluster 16 21 XP_001623517.3 (NV2.5463) 3.26 32.6 99.3% feature · violin
Cluster 16 22 XP_001633323.2 (NV2.20205) 4.54 32.5 100.0% feature · violin
Cluster 16 23 NV2.15300 not mapped 3.45 32.4 90.0% feature · violin
Cluster 16 24 XP_001639659.2 (NV2.18467) 3.16 32.4 99.6% feature · violin
Cluster 16 25 NV2.5435 not mapped 2.85 32.2 100.0% feature · violin
Cluster 16 26 XP_032239608.1 (NV2.23250) 4.72 32.2 100.0% feature · violin
Cluster 16 27 XP_001626294.2 (NV2.6419) 2.32 32.2 99.6% feature · violin
Cluster 16 28 XP_001637830.2 (NV2.24090) 2.45 32.1 100.0% feature · violin
Cluster 16 29 XP_048589003.1 (NV2.21794) 2.95 32.1 98.4% feature · violin
Cluster 16 30 XP_001636882.2 (NV2.11574) 3.02 32.1 98.6% feature · violin
Cluster 16 31 XP_001633026.1 (NV2.21707) 3.07 32.0 100.0% feature · violin
Cluster 16 32 XP_048576813.1 (NV2.4252) 2.56 32.0 98.2% feature · violin
Cluster 16 33 XP_032234953.2 (NV2.10215) 2.54 31.8 99.8% feature · violin
Cluster 16 34 XP_048584521.1 (NV2.18567) 2.71 31.8 100.0% feature · violin
Cluster 16 35 XP_048580757.1 (NV2.15044) 1.48 31.7 100.0% feature · violin
Cluster 16 36 XP_032237477.1 (NV2.3891) 4.84 31.7 99.8% feature · violin
Cluster 16 37 XP_032238944.1 (NV2.3196) 2.91 31.7 99.8% feature · violin
Cluster 16 38 XP_001640083.2 (NV2.6961) 1.99 31.6 100.0% feature · violin
Cluster 16 39 XP_048578159.1 (NV2.8959) 2.58 31.5 100.0% feature · violin
Cluster 16 40 XP_032237142.1 (NV2.19505) 3.02 31.5 93.0% feature · violin
Cluster 16 41 NV2.3291 not mapped 2.63 31.5 100.0% feature · violin
Cluster 16 42 XP_001641170.1 (NV2.17856) 2.41 31.5 100.0% feature · violin
Cluster 16 43 XP_032217748.1 (NV2.1181) 2.33 31.5 96.2% feature · violin
Cluster 16 44 XP_048575640.1 (NV2.7636) 2.85 31.4 99.6% feature · violin
Cluster 16 45 XP_001628339.1 (NV2.6591) 3.60 31.4 100.0% feature · violin
Cluster 16 46 XP_001626706.1 (NV2.23687) 2.62 31.4 99.5% feature · violin
Cluster 16 47 XP_001628775.3 (NV2.4207) 4.08 31.3 96.6% feature · violin
Cluster 16 48 XP_032222865.1 (NV2.12064) 1.29 31.3 100.0% feature · violin
Cluster 16 49 NV2.1972 not mapped 3.14 31.3 99.5% feature · violin
Cluster 16 50 XP_001639405.3 (NV2.5166) 3.31 31.2 94.5% feature · violin

Where an identifier could be established, the gene is shown as the accession the rest of this site uses for Nematostella vectensis, with the source dataset's own ID in parentheses (hover for why; the rule and the coverage are in the manual). Those IDs are the keys the underlying data files use, so they are what the links here carry. 9 of the 50 identifiers listed on this page carry a not mapped mark: they are the source study's own gene models, and no accession could be justified for them. They are left as they are rather than given a best guess.

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